Cryptomeria japonica (Japanese cedar): 131040729
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Entry
131040729 CDS
T10556
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131040729
Spliceosome [BR:
cjf03041
]
Complex C
Other components
Step II factors
131040729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
IBR
DEAD
HA2_C
IBR_1
AAA_22
AAA_19
zf-RING_UBOX
AAA_29
HA2_N
ABC_tran
Spectrin_SYNE1
AAA_30
Motif
Other DBs
NCBI-GeneID:
131040729
NCBI-ProteinID:
XP_057829663
LinkDB
All DBs
Position
5:complement(682798966..682871833)
Genome browser
AA seq
1697 aa
AA seq
DB search
MESLSEVKIWGKEICGQNKSELTTLIEACPGWKQWEICTASGPLAARLFFHVSEDAVEVF
AFLWEQRLLGFHSWTPEICSEVGEEDIRKEGDKRVRPIFLNYVKNLRNGEAAGKCRREIE
EIESELKKCTKDLKARNRLVDWHRLQGLKEGLSVQIEILKKKWGEFERALQCLESYLGNS
VEYYDNFDCCAEERPVFVLGNGWTWEQLYNILVRECSRLESALPMYSSRREIINHVHLQQ
VMVLIGETGSGKSTQLVQFLADSGFTLNGSLVCTQPRKVAAMSLTQRVAGECRGCYEDTC
SVSCCTAYVPQERPLSKITYMTDHRLLQVCMLDTELTHISCIIVDEAHERSLSTDLLLAL
LKRCLLKRPDLRLIIMSATADAKTLSDFFCGCVIFHVPGRNFPVDIKYVANEAEASESST
IKYGRLNIPSYVTQMIRIIADIHAKEDKGAILAFLTSQFEVEWARDQFQKPSAMTFALHG
KLSIEEQNSVFEDAPLGKRKVIFATNIAETSLTIPGVRFVVDSGMVKESRFDPKTGMNVL
RVCQISQSAATQRSGRAGRTQPGVCYRLYTKEEFSAMASYRDPEILRVHVGIAILKLLAL
GIQDLESFDFVQAPSQDAIDMAVKNLFHLGAVNFCQGHLKLTELGLNIVKLGVEPRLGKI
IIESFSQGLGREGLVLAAVMANASSIFCRVGTEAEKSKSDRLKLRFCHPDGDLFTFLAVY
KAWENEPPGRRNRWCWENSINAKTMMRCKDAITEMELCLKHEMNIIIQRHWAWSPFVSNQ
YGIVLRRIILSSMVENIAMFSGYDRLGYDIAATGQQAYLHPSCSLLVFGSKPTWVVFGEV
LCTTRQFLVCVTVVEEDWISTIQPLPSYDIFLLKKLTMQKKVITGLGRCLLKRFSGKANC
NLHSLVDHIQQRCNSHRLGIEIDHDKQEIQLFAVAEKMGQAYGLLENVLKSERRWMHNDC
MEKSLFFAPRGKYSPLALFGAGAEIKHLEMEDKYLSVEVCHPNVQVLDDRELLLLFENLT
GGIAGFQKHTGAGKEGLGIEKWGIITFFNPEAAQKAVLYGNNLELVASSLTVSPFNMTPI
MDHKRPGFPAVKATLTWPRRQSKGMAVIRCEREDVDRIAYACSGMVIGRSLVQCRRGKTD
GSVFMTGLDTEVTESQVLQALLRVTDRKIVDVGLIRQHASPQPSSASCETALLQELIKFV
PQEKCQVTVHNSDPKDFTTRALVTFDGSIHLRAAMALSQLQGKVLTVCMPWQKITCEQKF
HSTILCPAPIYSVLKMELLSLIESSQKENTGLKIILNKSEYGCYKLKISSNTMKAVVKCR
SSLEELLKGTVVTDDRLDPAAIQLLFTREGIQLLRSLEQKTNKTYILFERRSLSIKIFGP
SDKNEKTATDLIDGLKLLLENKHHEISLRGEGVPHGLMKETVERFGVDLSGLKRLIPEAE
FTLDTRRHVLSVQGSREAKTKAGCVITETANSLKGTTNKMLKEVEERENDCPICFCDIED
CYRLEGCGHAFCRSCLVDQCNSALRHHEGFPITCACENCDSLFLICDLRSLLSFEQLDDL
FRSSLGAFVASSKGTYRFCTTPDCPSVYEVSSSGKLFVCGNCSVELCTSCHLEYHPYLSC
EKYKEFKQDPDASLKEWCEGKADVKRCSSCGFIIEKTEGCNHINCKCGKHICWVCLESFD
SSEGCYNHLRSVHGGYL
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtctaagtgaagtgaaaatttgggggaaggagatctgcggtcagaacaagagc
gagctgacgaccttgatcgaagcatgcccgggttggaaacagtgggagatatgtacagcc
tcagggcctttggctgcaaggctgttttttcatgtttcagaagatgcagtggaagttttt
gcttttctgtgggaacagcgtctgttaggttttcactcgtggactccagaaatttgctca
gaggtaggagaagaagatattcgcaaggagggcgacaagagagtgcggccgatttttttg
aattatgtaaaaaatttgcggaatggcgaggctgcgggcaagtgcaggagggaaattgag
gaaatagagagcgagcttaagaagtgtactaaggatttaaaggcgcggaataggttggtg
gactggcatcggctgcaggggctgaaggagggtttgtctgtgcaaattgaaattctgaag
aaaaaatggggggaattcgagagggctctgcagtgtttggagtcttatttgggcaattct
gtggagtattatgataatttcgattgctgtgccgaggagaggcctgtttttgtgctggga
aatggctggacttgggagcagctgtataatattcttgtcagggagtgcagccgtctcgag
tcggccttgcctatgtattcgagcagaagggagattattaatcatgttcatttgcagcag
gtaatggtactaatcggtgaaactggttctgggaaaagtacccaactagtgcagtttctt
gcagactcagggtttaccctgaatggttctttggtatgcacgcaacccagaaaagttgct
gcaatgtctctaacacaacgtgttgcaggcgaatgcagaggatgctatgaagacacatgc
tctgtttcttgttgcactgcatatgtaccacaagaaagacccttatccaagattacgtat
atgactgatcacaggctacttcaagtatgtatgttggacacagagttgacacacattagc
tgtattatagtagatgaagctcatgagcgcagcttaagtacggacctgcttttggcactg
ctcaaaagatgcttgttaaaaagaccagacttgagactaatcataatgtctgcaacagca
gatgcgaagacattatcagattttttttgtggttgtgtaatttttcatgttccaggaagg
aattttcctgtagacattaagtatgttgcaaatgaggcagaagcctcggaaagctctact
ataaaatatggccgattaaatattccttcatatgtcactcagatgataaggataattgct
gatatacatgcaaaagaagataagggagcaattctggcttttttaacttctcagtttgaa
gtagagtgggctcgagatcagtttcagaaaccctcagcaatgacatttgcattgcatgga
aaactctcaattgaagagcaaaatagtgtatttgaggatgcacctttaggaaaaagaaaa
gttatttttgcaacaaacatagcagagacatctctaacaatacctggtgttagatttgtt
gtggactctggcatggtgaaagagagcaggtttgaccctaaaacgggtatgaatgtcctg
agggtgtgtcaaattagtcaaagtgcagccactcaacggtctggtcgtgctgggcgcact
caacctggagtgtgctaccgcctctacacaaaagaggagtttagtgctatggcatcctat
agagatccagaaatcttgcgagttcatgttggcattgctattctcaagcttctagctttg
ggtatccaggacctggaatcttttgattttgttcaagccccaagtcaggacgctattgac
atggctgtaaagaatttattccacctaggtgcagtgaacttttgccaggggcatttaaaa
ttgactgaattgggtttgaacattgtaaaactgggagtagaacctcgattagggaagatt
atcatagagagtttttctcagggtttgggtagagaaggccttgttctggctgctgtgatg
gcaaatgcaagtagtatcttttgcagggttggtacagaagcagaaaaatcgaagtctgat
cgtctgaaactccgcttctgtcatccagatggagatctttttactttcctcgctgtttac
aaggcatgggagaatgaacccccaggaaggagaaatagatggtgctgggaaaacagtatc
aatgctaagaccatgatgcggtgtaaagatgctataacagaaatggaattgtgtcttaag
catgagatgaatataattattcaaaggcactgggcttggtcaccatttgtttctaaccaa
tatggaatagtgttgaggagaattattctgtcctcaatggtggaaaacatagccatgttt
tcagggtatgatcgtctaggctatgacatagctgctacaggacagcaagcatatcttcat
ccttcatgctcactgttagtttttggtagcaaacctacctgggttgtctttggtgaagtc
ttgtgtacgacaaggcagtttttggtttgtgtgacagttgtagaggaggactggatttct
acaatacaacctcttccttcatatgatatttttctattgaaaaaacttacaatgcagaag
aaagtaattactggccttggaagatgtcttttaaagagattcagtgggaaggcaaattgc
aatctacattcgcttgttgatcacattcagcaaagatgcaacagccataggttgggcata
gaaattgatcatgataaacaagaaatacaactttttgctgtggcagagaaaatgggtcag
gcatatgggttgctggaaaatgtgttgaaaagtgaacggaggtggatgcataatgactgc
atggaaaagtctttattctttgcacctcgtggaaagtactctcctttggcactttttggt
gctggtgcagaaataaagcatcttgaaatggaggataaatacttgagtgttgaggtttgt
catccaaatgtacaagttcttgatgatagagaactattattattgtttgaaaatttaact
ggtggcatagctggtttccaaaagcacacaggggcagggaaagaaggattaggtattgaa
aagtggggtataataacattttttaaccctgaagcagctcagaaagcagtcctctatggt
aataatttggagctagtagcttcttccttaactgtctctcctttcaacatgactcctata
atggatcataagagacctggatttccagctgtcaaagcaacacttacatggcctcgacgg
cagagtaagggaatggctgtcattcgatgtgaacgtgaagatgttgatcgaattgcatat
gcctgctctggtatggtcataggaagatctcttgtgcagtgtagacgtgggaaaacagat
ggatctgtttttatgactggtctagacacagaggtcactgaaagccaagtattgcaggcc
ttgctacgtgtcactgatcgcaaaattgtggatgttggtcttattcgacagcatgctagc
ccacagccttcaagtgctagctgtgagacagctttgttacaagagctcataaagtttgta
cctcaagagaagtgccaggtgactgtacacaattcagatccaaaagatttcactactcgt
gccctagttacgtttgatggcagcatacatctgagagcagcaatggcattgtctcaactt
caaggaaaagttctcactgtttgtatgccttggcaaaagataacttgtgaacaaaaattt
cacagcactattctttgccctgctccaatttattctgttctaaaaatggaattactgagc
ctgattgagtcttctcaaaaggaaaatacagggttgaagataatcttgaacaagtctgag
tatggatgctacaagttgaaaatatcatcaaacacaatgaaagctgttgtaaaatgcaga
tcttctttggaagaactactaaaaggaactgttgtaacggatgataggctggatcctgca
gctatacaactgctttttactcgagaagggatccagcttctaagatctttggaacagaag
actaataagacttacattttatttgaaaggcgcagtcttagcatcaaaatttttggtcca
tctgacaagaatgagaaaaccgccacagatctcatagatggtttaaagctacttcttgaa
aacaaacaccatgagatatcccttagaggggaaggggtgccacatggattgatgaaggag
actgttgaaaggttcggggtagatttatctggacttaaaagactgattcctgaagcagaa
tttacccttgacacaaggcgccatgttttgtctgtacaaggtagcagggaggcaaaaact
aaagctgggtgtgtcatcactgaaactgcaaatagtttaaagggaactacgaataagatg
ctaaaagaagttgaggaaagggaaaatgattgccctatttgcttctgtgatattgaagac
tgttatagacttgaaggatgtgggcatgccttttgcaggtcatgcttggttgaccaatgt
aactcagccctgcgccatcatgagggatttccaattacttgtgcatgtgaaaattgtgac
tcattgtttttaatttgtgatctaagatctttgctttcgtttgaacaattggatgattta
tttcgatcttcacttggggcatttgtagcttccagtaaaggtacctacaggttctgcacc
actccagattgcccatctgtatatgaggtatccagttctggaaaactctttgtttgtgga
aattgttcagtagagttgtgtaccagctgtcatttagaatatcatccatatttgtcatgt
gagaagtataaagaatttaaacaagacccggatgcttctctcaaagaatggtgcgaaggc
aaagcagatgtcaaaaggtgttcttcctgtggtttcataattgagaaaactgaaggttgt
aatcatatcaattgtaagtgtggcaaacatatttgttgggtatgtctagaatcatttgat
agcagtgaaggctgttataaccatttgcgttctgtacatggtgggtatttataa
DBGET
integrated database retrieval system
