Cryptomeria japonica (Japanese cedar): 131041394
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Entry
131041394 CDS
T10556
Name
(RefSeq) DNA mismatch repair protein MLH1
KO
K08734
DNA mismatch repair protein MLH1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03430
Mismatch repair
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131041394
03460 Fanconi anemia pathway
131041394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131041394
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
131041394
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
131041394
NCBI-ProteinID:
XP_057830433
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Position
11:448421325..448804435
Genome browser
AA seq
719 aa
AA seq
DB search
MEARSMDAEACSVEAPPIRRLEESVVNRIAAGEVIQRPFSAVKELVENSLDASSSSINVY
IKDGGLKLIQVSDNGHGIRYEDLPILCERHTTSKLTSYEDLKTISSLGFRGEALASMTFV
AHVTVTTITEGQTHGYRASYKDGVLEQEPRPCAAVKGTQIMVENLFYNMAARRKSFKNLS
DEYARILDVISRYAIQKINVSFSCKKHGDSTTDVHTTGMGSRIDAIRSIYGPSVARELVE
ITASDDDISRSIFKMEGLVSSANYSAKKTTMVLFINDRLVECSPLKKAIEVVYSAILPKA
SKPFIYMSIVLPSEHVDVNIHPTKREVSLLNQESLVDTIQNAVEAKLMHSNTTRIFYTQK
TLPGISKVANTEEEESLSQKLETKLPNVPVRKIVRTDSSNPAGRMHAFLQKKPNGGQEAQ
GDLVTIRHAVRQRRNPKETADLTSIHELMDAVDRNTHSGLLDIVKDCTYVGMADNTSALV
QYKTQLYLVNVVKLSRELMYQQVIRRFAHFDALQLSNPPPIFELLLISLDEEERSGLWDE
SDGPKEQIARLNVELLEKKYEMLKEYFCVGIDQQGNLYNLPLVLDQYTPDMDRLPQFVWT
LTNDVDWDTEKGCFESIAAAIGDFYALHPPLLPNPSEEGPKFYQISEGNDHMDQQKETNI
DEDLIEEAKIKWDQREWAIQHILFPSLKLFLKPPKEMASDGTFVQVACLENLFKIFERC
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggaagctcgttcaatggacgcggaagcttgctcagtagaagcaccgcccatacggcgg
ctagaggagtcggtggtgaatcgaatcgcagcaggggaagttatccagcgcccattttct
gccgtgaaagaattggtggagaacagcctggatgcgtcctcttcttccatcaatgtctac
atcaaggacggaggtctcaagctcattcaggtctccgacaatggccacggcattcgatat
gaagacttgcctatattatgtgagaggcatacaacgtcaaagttgacttcatatgaagat
ttgaaaacaatcagctctctaggtttccgaggagaagctttagctagtatgacatttgtt
gcacacgtgactgttacaacaatcacagaaggtcaaacacatggttacagagcatcatat
aaggatggagtattggaacaggagcctcgcccttgtgcagcagtgaaaggaactcagata
atggttgaaaatcttttttataacatggctgctcgtagaaaatcattcaagaatttaagc
gatgagtatgcacgcattttagatgttattagtcgttatgcaattcagaagataaatgtg
agcttttcttgcaaaaagcatggtgatagcacaacagatgttcacacgacaggtatgggt
tcaagaatagatgcaattaggtccatttatggtccatctgttgctcgtgagcttgttgaa
ataacagcttcagatgacgatatctcacgctcaatcttcaagatggaaggtctcgtttca
agtgcaaattacagtgctaagaaaaccactatggtgctttttataaatgataggctggtt
gaatgcagcccactgaaaaaagctattgaagtggtttactctgccatcttgccaaaagca
tcaaagccttttatctatatgtctatagtgctgccgtctgaacatgttgatgtgaatatt
catcctacaaaaagggaggtcagtcttttgaatcaagagagtcttgtggacaccatacag
aacgctgttgaggcaaaattgatgcactcaaacacaacaaggatattttacacccagaaa
actctgcctggcatatcaaaggttgctaatactgaagaggaagaaagtttatcccaaaag
cttgaaacaaaattaccaaatgttccagtccgtaaaatagtacggacagattcatcaaat
ccagcaggaaggatgcatgctttcttacaaaagaagcctaatggaggtcaggaagctcaa
ggtgatctggttactataaggcatgctgtaagacaaagacgcaatccaaaggaaactgca
gatttgacaagcatacatgagctcatggatgctgttgatcggaatactcactcagggcta
ttggatattgtcaaagattgtacatatgttgggatggcagacaacacttcggcattggtg
caatacaagacacaattgtatcttgtgaatgtcgtgaaactaagtagagagcttatgtat
cagcaggttattcgacgatttgctcattttgatgccctgcagctaagtaatcctcctcct
atttttgaattgcttctgatttcccttgatgaagaggagcgaagtggtctgtgggatgaa
agcgatggtcccaaagagcagatagcaaggttgaacgttgaactgcttgaaaagaagtat
gaaatgttaaaagaatatttttgtgttggaattgatcagcaaggcaacctatataacctg
ccactagtgcttgaccaatatactcctgacatggatcgtcttccccagtttgtttggact
ttgacaaacgatgttgactgggatacagaaaaaggttgctttgagtccattgctgctgct
attggggatttctatgctctgcatcctccacttttgccaaatccctccgaagaaggaccg
aaattttatcagatatcagaaggaaatgatcacatggatcaacagaaagaaactaatatt
gatgaggatctaattgaagaagcaaaaataaaatgggaccagagggaatgggcaatacaa
catattctattcccatctttgaaattgtttcttaaacctccaaaagagatggccagcgat
ggtacattcgtacaggtagcctgtttggaaaatcttttcaagatttttgagagatgttga
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