Cryptomeria japonica (Japanese cedar): 131041480
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Entry
131041480 CDS
T10556
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131041480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131041480
03009 Ribosome biogenesis [BR:
cjf03009
]
131041480
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131041480
Spliceosome [BR:
cjf03041
]
Complex A
U1 snRNP components
U1 related factors
131041480
Complex B
131041480
Ribosome biogenesis [BR:
cjf03009
]
Eukaryotic type
Pre-60S particles
Helicases
131041480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131041480
NCBI-ProteinID:
XP_057830579
LinkDB
All DBs
Position
7:409028451..409044695
Genome browser
AA seq
584 aa
AA seq
DB search
MNRFDNRYGDPNSYRERKSDFMGGFGGGSASGGRSGGFGRGGYGGGEAGYGGGRGGGGRG
AYNGFSSGGRGYEGGRGGGRGFSGGRGGRGSRDSERSRGELDSVNLPKEDFDNLIPFEKN
FYVERPSVAALTDQEVSAYRRRRDITVEGREIPKPLMYFQEASFPEYVLKEIERAGFNEP
TAIQSQGWPMALKGRDLVGIAETGSGKTLAYLLPGIVHVNAQPYLAPGDGPIVLVLAPTR
ELAVQIQQEAIKFGTSSKIKSTCVYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHT
NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVEQLARQFLHNP
YKVIIGSPDLKANHSIGQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFMETKKGCDQVTK
QLRMDGWPALSIHGDKSQAERDWVLAEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFP
GSLEDYVHRIGRTGRAGATGTAYSFFTAANARFARELISILREAGQPVNGQLAAMARGGG
GNGSGGYGGGYRGRGRGRGRGGYGNRSVISGSNTIPLGGSGRQW
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcttcgacaacagatatggtgaccccaattcttaccgcgagcgtaagagtgat
tttatgggtggctttggtggaggtagtgccagtggtggaaggagcggtggttttggacgt
ggaggttatgggggtggcgaggcaggttatggaggtggaagaggagggggtggaagaggt
gcatataatggttttagttccggaggtcgaggctatgaggggggccgtggtggtggcagg
gggttttctgggggacgaggtggtaggggaagtagagattctgaaaggtcgaggggggag
ttagattctgttaatctcccaaaagaagattttgataacttgattccttttgagaaaaat
ttctatgtagaacggccgtctgtagcagcactaacagatcaagaagtaagtgcctatcgc
agaagacgcgatataactgtggaaggccgtgaaattcctaagccccttatgtattttcaa
gaagcaagctttccagagtatgttctcaaagagattgagagggcgggattcaacgagcca
actgctatacaatctcagggatggccgatggctctgaagggtagagatttggttggtata
gctgaaactggttctggcaaaacacttgcctatcttttgccaggaatagttcatgtcaat
gcgcagccctatttagctcccggtgatggtccgattgtcttggtgttagcacctactcgg
gaacttgctgttcagatccagcaagaagctatcaaatttggaacatcctcaaagatcaaa
agcacgtgcgtatacggaggggctccaaaaggtcctcaaatacgtgatcttcaaagaggg
gttgagattgtaattgccacacctggccgacttattgatatgttggaagcacggcacaca
aacctgcggagggtgacatatcttgtattagatgaagctgatcgcatgctagacatgggt
tttgaaccgcagataagaaaaattgtatctcaaatccgtccagataggcagacactgctg
tggagcgctacttggccaagggaagtcgaacaactagcaaggcaatttttacataatcca
tacaaggtaatcatcggttcaccagatttgaaggctaatcattcaataggccagattgtg
gaggttgtttctgagtatgagaaatatccaagattgatcaagcttcttgaggagataatg
gatggaagccggattctgatttttatggaaaccaagaagggatgtgatcaggttactaaa
cagcttcgcatggatggctggccagcattgtccatccatggtgataaaagtcaggctgaa
agagactgggtcttagcagagtttaaagctgggaaaagtcctattatgactgctactgat
gtggctgcacgtggtttggatgtgaaggatataaaatgtgtcattaattatgattttcct
ggttctttggaggattatgtacatcgtattggtcgtactggaagagctggggccacgggc
acagcttactctttcttcactgctgcaaacgcaagatttgccagggaactgattagtatt
cttcgagaagctgggcagcctgttaatggtcaacttgctgccatggcccgcggaggtgga
gggaatggtagtggaggttatggaggaggatatcgtggccgtggtcgtggccgtggccgt
ggtggttatggaaatcgtagtgtcatttctggttcaaacactattcctcttggtggatct
gggagacaatggtag
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