Cryptomeria japonica (Japanese cedar): 131041827
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Entry
131041827 CDS
T10556
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04142
Lysosome
cjf04144
Endocytosis
cjf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
131041827
04142 Lysosome
131041827
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
131041827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131041827
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjf04147
]
131041827
Membrane trafficking [BR:
cjf04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
131041827
Exosome [BR:
cjf04147
]
Exosomal proteins
Proteins found in most exosomes
131041827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
IcmW
Motif
Other DBs
NCBI-GeneID:
131041827
NCBI-ProteinID:
XP_057831032
LinkDB
All DBs
Position
7:complement(816372429..816393964)
Genome browser
AA seq
1702 aa
AA seq
DB search
MAAASAPITMKEALTLPSLGINPQFITFTHVTMESDKYICVRETAPANSVVIIDTNNPVP
VMRRPITADSALMNPNSRILALKAQIPGTTQDHLQIFNIEMKAKVKSFQMPEQVVFWKWI
TPKMLGLVTQSSVYHWSLEGDSEPVRMFERTANLTGNQIINYRCDPTEKWLVLIGIAPGA
PERPQLVKGNMQLFSVEQQRSQALEAHAAAFATFKVAGNENPSILISFASKTITGGQLTS
KLHVIELGAQPGKPGFTKKQADLFFPPDFADDFPVSMQISHKYSLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTSEATAVGGFFAVNRRGQVLLATVNEATIVSFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFSQMKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
PGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNVITDLFLQRNMIREATSFLLDVLKPNLPEHAHLQTKVLE
INLVTFPNVADAILANGIFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQAAKEYSEQLGADSCIKLFEQFK
SYEGLYFFLGAYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEA
RLPDARPLINVCDRFGFVPDLTHYLYSNNMLRYIEGYVQKVNPSNAPLVVGQLLDDDCPE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDT
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARY
VVERMEPELWEKVLNPENPFRRQLIDQVVSTALPESKNPDQVSATVKAFMTADLPHELIE
LLEKIVLQNSAFSGNPNLQNLLILTAIKADKSRVMDYINRLDNFDGPAVGEIAVGAELYE
EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFASRVEEDAVWSQVAKAQLREGMVSDAIE
SFIRADDATEFLDVIRAAELANVYHDLVKYLLMVRKKIKEPKVDSELIYAYAKIDRLGEI
EEFILTPNVANLQSVGDRLFDEALYEAAKIIFTFISNWAKLASTLVKLGQFQGAVDAARK
ANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSDYYQNRGRFDELISLMESG
LGLERAHMGIFTELGILYARYRPDKLMEHIKLFSTRLNIPRVIRVCDEQQHWKELTYLYI
QDDEYDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDLLNVL
ALKVDHTRVVDIMRKAGHLRLVKPYMVAVQSNNVAAVNEALNEIYVEEEDYDRLRESIDM
HDNFDQIGLAQRVEKHELLEFRRIAAFIYKKAGRWRQSVALSKKDNLYKDAMETSSQSGD
RELAEELLVYFVEQGKKECFASCLFICYDLIRPDVALELAWMNNMIDFVFPYLLQFIREY
TTKVDELVKDKLEAAQEEKSKEKEEKDLVAQQNMYAQLLPLALPAPPMPGMGVGMGGGFQ
PGMGGMGMPPMPAYGMPPMGGY
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagctagcgcaccgatcaccatgaaggaggcgctgacgttgccaagccttggg
ataaatcctcagtttattacattcactcacgttacaatggaatcggacaagtacatttgt
gtacgggaaactgctcctgcaaacagtgttgtgatcattgacacgaataatcctgtgcct
gtgatgaggagacctattacagcagattcagcgctaatgaatcccaacagtagaattctc
gcattgaaagctcaaataccaggcaccactcaggatcatctacagatatttaacattgag
atgaaggcaaaggtgaaatcgtttcagatgcctgaacaggttgtcttttggaaatggatc
acaccaaagatgttgggtcttgttacacagagttcagtgtatcattggtcattggaaggt
gattctgaacctgtacgaatgtttgagcgaacggccaatttaacaggcaaccagataata
aattatcgatgtgatcccaccgaaaagtggcttgttttgattggaattgctccaggagca
cctgagaggccacaacttgtcaaggggaacatgcagttgttttctgtagagcagcagcga
agtcaagctctagaagctcatgcagctgcatttgcaacatttaaggttgcaggcaatgaa
aatccttccatccttatttccttcgcttctaaaacaatcactggagggcagctcacttca
aagctacacgtgattgagcttggtgcacagccaggtaagccagggttcacaaagaaacag
gcggatctgttcttcccaccagattttgcagatgattttccagtatccatgcagatatca
cacaagtacagtctgatatatgtcattacaaagctgggacttctatttgtttatgattta
gaaacagcaacagcagtttacaggaatcggatcagtcccgatccaatctttttaacatct
gaagcaactgcagttggtgggttctttgctgtcaatcggagggggcaagtgttgctggca
actgtcaatgaagctacaattgtatcttttgttagtggacagctcaacaatcttgagctt
gctgtgaatcttgctaaaagaggaaaccttcctggggctgaaaatctggttgtccagcga
ttccaagagttgttttctcagatgaagtataaagaagcggcagaacttgctgcagaatct
cctcaaggcattcttcgtacgccagacactgtagcaaagttccagagtgttccagtacaa
ccagggcaaacaccacctcttctgcagtattttggtactctactgacaaagggaaagtta
aatgcttttgagtctcttgaactctcacgattagttgtaaaccagaataaaaagaacctt
ttggagaattggcttgctgaggacaaattggagtgtagtgaggaattgggggatcttgtg
aagaccgtggacaatgaccttgcactaaaaatttacattaaagcaagggctacccccaaa
gtagttgcagcttttgctgagagaagggaattcgacaaaatacttatttactctaaacag
gttgggtacactcctgattacctgttcctcctccagacaattttgcgctctgacccccag
ggcgctgtaaattttgcactgatgatgtctcaaatggaaggtggttgtccagttgactac
aatgtcatcacagatctctttcttcagcgtaacatgatccgtgaagcaacatccttttta
ttggatgttttgaagcctaatttgccagaacatgcacatcttcaaactaaggttcttgag
attaatttggtcactttccccaatgtagctgatgctatcttggcaaatggaattttcagt
cactatgatcgtcctcgtattgcacaattgtgtgagaaagctggtttatatatgcgtgca
cttcagcactatacagagttgcccgatatcaaacgtgtcattgtcaacacccatgctatt
gagccacaggctctcgttgagttctttgggaccctttctagagaatgggcgttggagtgc
atgaaagatctcctccttgtcaacctgaggggaaatctccaaatcattgtccaggctgcc
aaggaatattctgaacaattgggtgcagattcatgcatcaagctctttgaacagttcaag
tcttatgaagggctctatttcttcttgggtgcatatttgagctccagtgaggatcccgac
attcacttcaaatacatcgaagcagcggccaaaactggacaaatcaaggaggtggaacgt
gtaaccagagagtctaacttctatgatgctgaaaagacaaagaactttcttatggaagca
agacttccagatgctcgtccactgataaatgtttgtgatcggtttggatttgtaccagat
cttacccattacttatattcaaacaatatgctgcgatatattgaaggctatgtccaaaag
gtaaatccaagcaatgctcctttagttgttggtcagctgcttgatgatgattgtccggag
gacttcatcaaaggtcttattctgtctgttcgttctctccttcctgttgaaccacttgtc
gaagaatgcgagaaaaggaaccggcttcgattgctgacacaatttttagaacatcttgtg
agcgaaggaagtcaggatgtgcatgtacacaatgcattgggtaaaatcatcattgataca
aataataatccagagcacttcctcactacaaatccctactatgattctcgggtggtgggt
aaatactgtgagaaaagggatccaactctggcagttgttgcatataggcgggggcaatgt
gatgaagagcttattaatgttaccaataaaaattctctatttaagctccaagcaaggtat
gttgttgagcggatggaacctgaactttgggaaaaagttctcaacccagaaaatcctttc
cggaggcaacttattgatcaagttgtatcaactgctttacctgaaagcaaaaatccagat
caggtatctgcaacagtgaaagcatttatgactgctgatctgccgcacgagttgattgaa
cttctagagaagattgttctacaaaattctgctttcagtggaaatcctaatctgcaaaat
cttctcatcctgacagccattaaggctgataagtctcgtgtaatggactacattaatagg
ttggacaactttgatggccctgcagttggggaaattgctgttggagcagaattatacgag
gaggcctttgctatctttaagaagtttaatctaaatgtacaagctgtaaatgttctctta
gacaacattcgaagcattgagcgggctgtggagtttgcctcccgtgttgaggaggatgca
gtctggagtcaagtggcaaaggcacaactcagggagggaatggtcagtgatgctattgaa
tcattcattcgtgctgatgatgctacagagttccttgatgtgataagggctgctgagcta
gctaatgtgtatcatgacctagttaagtatttgctgatggtaaggaaaaagattaaagag
ccaaaggttgacagtgagcttatctatgcatatgctaagattgacaggcttggtgaaatt
gaagaatttatactgacaccaaatgtcgctaatcttcaaagtgtgggagatcgtctattt
gatgaagctctatatgaggctgctaagataattttcactttcatttccaactgggcaaaa
cttgccagcacacttgtcaaacttggtcagttccaaggagcagttgatgctgctcggaag
gcaaacagttcaaagacatggaaggaagtatgttttgcttgtgttgatgccgaggagttt
agattggcccaaatctgtggtttgaacatcattatacaggtggatgacttggaagaggtc
agtgattactatcaaaacaggggtcgctttgatgaactcatatctctgatggaaagtggt
ttggggttggagcgtgcacatatgggcatctttacagagctgggcatcctatatgccaga
tatcgcccggacaagctgatggaacatatcaaattattttcgacacggctcaatataccc
agggttatccgtgtttgtgatgagcagcagcactggaaggaacttacatatttatatatt
caagatgatgagtatgacaatgccgccactactatcatgaaccattctccagaggcatgg
gatcatatgcaattcaaagatgtagtagttaaagtggccaatgttgaattgtactacaaa
gctgtccacttttatttgcaagaacacccagatcttattaatgacctcttgaatgtcctt
gcccttaaggtagaccacacacgagtagttgacatcatgcgtaaggctggacatctccgt
cttgtgaagccatacatggttgcagtacagagcaataatgtagctgctgttaatgaggca
ttgaatgaaatttatgtagaagaggaagattatgataggcttcgagaatctatagatatg
catgataactttgatcagatagggcttgctcagagggttgagaaacatgaacttcttgaa
ttccgccgtattgctgctttcatttacaagaaagcaggaagatggaggcagtctgttgca
ttgtctaaaaaggataatctttacaaagatgcaatggaaactagttctcaatcgggtgat
cgtgaacttgcagaggaattgctggtgtattttgtggaacagggcaagaaagaatgcttt
gcttcgtgcttgttcatatgctatgacttgatcagaccagatgtggctttggaacttgcc
tggatgaataatatgattgactttgtgtttccatacctacttcagttcattcgagaatac
acaacaaaagttgatgagcttgttaaggacaagttagaggctgcccaagaagagaaatcc
aaggagaaagaagagaaagatcttgttgcccaacagaatatgtatgctcagcttcttccc
cttgctttgccagcacctccaatgcctggcatgggagtgggcatgggaggtggctttcag
ccaggtatgggtggaatgggaatgcctcctatgccagcgtatggtatgccacctatgggt
ggctattga
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