Cryptomeria japonica (Japanese cedar): 131041843
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Entry
131041843 CDS
T10556
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131041843
03460 Fanconi anemia pathway
131041843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjf03032
]
131041843
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131041843
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
131041843
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Topoisomerases
131041843
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
131041843
FA (Fanconi anemia) pathway
131041843
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
DUF601
Motif
Other DBs
NCBI-GeneID:
131041843
NCBI-ProteinID:
XP_057831049
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Position
7:392704887..392936793
Genome browser
AA seq
866 aa
AA seq
DB search
MAPTVLMVAEKPSIALSIASVLSSGNMLTRRSNTDVHEFDGMFRSIRVRYKVTSVIGHVL
STDFPPTYQNWETTDPFDLFEAPIIKTESNPKAHIPKHLQQEARGCDYLVLWLDCDREGE
NICFEVMDCTLNMLRRGTGQQVFRARFSAITEKDISKAMNNLVEPNKNEALAVDARQEID
LKVGVAFTRFQTRYFQGKYGNLDSGVISYGPCQTPTLGFCVQRHLEITTFKPEPFWIVRP
HINKSGYQLQLSWDRNKVFDQDVSKVFQKLVIDSGSSKVVDVSQKEERKSRPSGLNTVNL
LKVASSALGLGPHHAMQIAERLYTQGYISYPRTESTAYPATFDFEGTLSVQCKNPNWGDY
VKSLIAMGYNPPRTGSDAGDHPPITPMQSATESQVGGGDAWKLYQYVTQHFIGSVSPDCK
YTRKRVEFLAGGEKFYCTGQSVTYQGFTAIMPWLGISEESLPPFSKGETIHISEVELYQG
LTSPPGYLTESELISLMEKHGIGTDASIPVHINNICERNYAQVHAGRQLIPTVLGITLIR
GYQSIDADLCLPEIRSFIEQQITLIAKGQVDHGRMVQHALQQFCAKYKYFVDQIEKMDVL
FEAQFSPLAESGRMLSKCGKCSRYMKYISIRPARLYCATCEEVYALPQSGTIKLYKELTC
PLDNFELVLCSLPGPDGKSYSLCPYCYNNPPFEGMETLFGGLSIGKANKSGGMPCSLCQH
PTCRHSVIKQGVCACPECDGTLVLDPVSAPKWRLDCNKCNCLVYLPHNSHRISTTDEHCN
ECGSTILEVDFNKKDTPLKDGATIHKACVLCDELLHSMVEVKHGKSFFRRPGRGRGRGGG
RGRGRGRGRGHSNNKNEDPRMSFRDF
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaactgtactcatggttgcagagaagccgagcattgcattgtctatagcatcg
gttctttcgtcgggaaatatgttgacacggcgatcaaacactgatgtgcacgaatttgat
ggaatgtttaggagcatacgggttcggtataaagtgacatctgtcattgggcatgtacta
agtactgatttccctccaacatatcagaactgggagacaactgacccctttgatcttttt
gaagctcccatcatcaaaacagaatccaatccaaaggcccacattcccaagcatttacaa
caagaagcacgaggatgtgactacttagtactgtggctcgattgtgaccgtgagggcgag
aatatatgttttgaagtaatggattgtactctcaatatgctgcggaggggtacaggtcag
caagttttccgtgcacgattttctgcaataactgagaaagacataagtaaagccatgaat
aatcttgttgaaccaaacaaaaatgaagcactagctgttgatgcacgtcaagagattgat
ctaaaggttggagttgcatttacacggtttcagacacgttattttcaaggcaaatatgga
aaccttgattccggtgttatttcttatgggccctgtcaaacgccaacacttgggttttgt
gtacaacgacatctggaaatcaccacatttaaaccagagccattttggattgttcgaccg
catatcaacaagagtggttatcaacttcagttatcatgggatcggaacaaagtatttgac
caagatgtatccaaagtctttcagaaattggtgattgattctggctcatccaaggttgta
gatgtttcacaaaaggaagagcgcaaaagtcgtccctctggtttgaatactgtaaatctg
ctcaaggttgcttccagtgcactaggcctggggcctcaccatgctatgcaaatagctgag
cgattatacacacaaggctacataagttacccccgaacagagagcacggcctacccagca
acatttgattttgaaggcaccctttctgtccaatgcaagaacccaaattggggcgattat
gtgaagtccttaattgctatgggatacaatcctccaagaacaggaagtgatgctggtgac
catcctcccataacacctatgcagtcagctacagaatctcaagtgggagggggtgatgcg
tggaaactctaccagtatgtaactcaacacttcattggaagtgtgagccctgattgcaaa
tatacaaggaaaagggtggaattcttagcaggaggagagaaattctactgtactggccaa
agtgtaacatatcaaggatttacagctattatgccttggctaggtatttctgaagaaagc
ctccctccattttccaaaggggaaaccatacatatttcagaagtagagctctatcaggga
ctcacttcaccccctggttacctcactgaaagtgagctaatttctctcatggagaagcat
gggattggcacagatgcttcaattccagttcacataaataatatatgtgaaaggaattat
gcacaggtacatgcaggaaggcagcttattcctacagttttaggaatcacactaatcaga
ggatatcagtccattgatgcagatctgtgcttgccagaaattcggagctttatagagcag
caaattaccttgattgcaaagggccaagttgaccatggtcgcatggttcaacatgcacta
caacaattctgtgccaagtataaatattttgttgatcagattgaaaaaatggatgtcctg
tttgaagcacaattctctcccctagctgagtctggtcgtatgctaagtaaatgtggtaaa
tgtagtcgctatatgaaatatatttccatccgaccagcacgcttgtattgtgcgacctgt
gaagaagtctatgctctccctcaaagtggtaccatcaagctatacaaagagttgacatgt
cctttggacaattttgagctggttttatgttccttaccaggaccagatggaaagtcatat
tctctttgtccatattgctataacaatcctccatttgaagggatggagactctttttggt
ggcctttccattggaaaggctaacaaaagtgggggtatgccctgcagtctttgtcaacac
cctacatgtcggcattcagttatcaagcagggtgtttgtgcctgtccagagtgtgatggt
acattagttcttgatcctgtcagtgccccaaaatggaggttagattgtaataagtgcaac
tgccttgtttaccttcctcataattctcataggatatcaactactgatgaacactgtaat
gagtgtggatcgaccattcttgaagtagatttcaataaaaaagacactccactgaaagat
ggtgctactatacataaagcatgtgtcctttgtgatgaattattgcattccatggtagag
gtgaagcatggtaaatcatttttcagaagaccaggtagaggtagaggaaggggtggtggt
cggggaagaggaagaggaaggggacgggggcattcaaataacaaaaatgaagacccaaga
atgagttttcgagacttctaa
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