Cryptomeria japonica (Japanese cedar): 131042443
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Entry
131042443 CDS
T10556
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131042443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131042443
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131042443
mRNA degradation factors
5'-3' decay
Decapping complex
131042443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
131042443
NCBI-ProteinID:
XP_057831700
LinkDB
All DBs
Position
1:complement(635298943..635380436)
Genome browser
AA seq
1421 aa
AA seq
DB search
MGSAGAPAGGFDMQKFFKPGSPANAVMPPPSAPYPPSQYPPNSTYSAASFSFPAQQQQQQ
QQQYLHHYNPNPSPPNPRPYTGLQNQSVFPQPTIPPLPSPIASPPLDGARLMALLTAHNS
DNNNGNNSNLPLPLSLPLPLPSNLELPPAALSAPHSHMAANSVAPPALAPAIPTAPPQPP
PSRLPSGKLPRGRHLVGEHVVYDIDYHLPGEAQPQLEVSPITNYSSDPLLVVGRQIAVNQ
TYICYGLRAGTIRILNINTALRALLRGHSQRVTDMAFFSEDVHLLASASSDGKIFIRKIV
EGFGDDEKIQITEQTLLAIQIAGDWESVHPRLCWHSHQQDVLVVGIGKYVLKIDIVKARS
ATRGGGGASEEPVKFNVDNPVEGVYCMGKHDGDVTDLSISQWTRWVSASKDGTVQIWGDK
KILPLATFKPHDAQSVSSVAFLTVPRRSDHIVLLTAGPLNRQLKLWVSASSDSMLMSSDS
EKWQCIQTLDLKSSSERHENAFFNQVLVLPRANLILLANAKRHAIYAVHMDFGSNPAATR
MDYLAEFSVTMPILSLTATSDNAADGEGIVQVYCVQPQAIQQYALDLSLCVPLPPPVELV
ASEKEISTTRMFEVSPSSAFTPVEPSHGNSAVHTTASDPQAKSPGALNVTEKALMSRSPV
LVSNMDASNIHDPLAMSGVDATYGISMPPAIRTDSAPLSSQVPVPLSPSFHGRQQPPKSP
SRTIEQGVVPVSSAGDQEYTTRPDMTSFETITTNRKVDDSFKKDDEKLGQNQPSTTMNTT
ISIESQISSNPTHLVTPSQLMSLAMPSLDKKEIKKGDNKHEDANVNKVNENMKPETKDAA
ITSLHQPEELGLYKQVENTSILIDTKEKVFATQASENCSENARQADSLSAEVQNIRENQS
GGDGEIFKEREQPSDNIQGNTEMTGKASESTLLPSISQSPSLGKGKKIKNKACLVSGPSS
TSVSPFTSAGSSDGEPSSTTSIPSIEAVSSQVSAMQDALNQLIALQKDLQNKMSMMVSIP
VTKEGKRLEAVLGQRIEKVMKAHTDAMLARFQEENAKREKAEREHVQQMTSLSNAINKDL
PTIFERVLKKEFSSLGPNVARMVTPSLEKAISTAINDAFQKGISDKALTQLEKSVGSKLD
SLVTRQIQSQFQSSGKQALQEALRTSFETSIIPAFERSSRAMFEQVDAAFQKGMAEHTAS
VQQQFAGSHSGLACTLQDTVASASSLAQALKGELADGQRRLLALAEGAGTSSTRLPTLNT
KQGNGGLIGLPDKAISLKHLEETLDPTKELSRLVGECKFEEAFHKALQMSDVSIVSWLCS
QVDPHSLLSTIPLPLSQGVLLALVQQLGCDLSKDMARKLIWIREAALALNPNDHLLAPHM
RPILEQLYQNLHRQMIVTSPAETSSLRLLLHVVNSILTACK
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgggctcggcaggtgcaccagcaggcggtttcgacatgcagaaattcttcaaaccaggc
agccctgcaaatgccgtgatgccgcctccttcagctccctacccgccttctcagtaccca
cctaattctacctattccgccgcatcattttccttcccagcccaacagcagcaacaacaa
cagcagcagtatctccatcattataaccctaaccctagcccaccaaatcctcgcccctat
accggcttgcaaaaccagtctgtttttccgcagcccacgataccgcctctgccctccccc
atcgcaagccctcctttggatggcgcgcgcttaatggctcttcttactgcgcacaattca
gacaataacaacggaaacaatagtaatttgcctctgcctttgtcattgccgttgcctttg
ccttcgaatcttgagctgccaccggctgccctaagcgctccccatagtcacatggccgct
aactctgttgcgcccccggcgctggcgcccgccattcctacggctccgccacagcccccc
cctagcaggctgcccagtggtaagcttcctcgcggcaggcatttggtgggagagcacgtg
gtttatgatatcgactatcacctgcctggggaggcgcagcctcagctcgaggtttcgcct
attacgaattatagttccgatccacttcttgtagtcggacggcaaattgcagtcaatcaa
acctacatttgctatggattgcgggcagggaccatcaggattcttaatatcaatactgca
ctccgagcgttgcttcgcggccacagccagagggtgacagatatggcctttttctctgaa
gatgtccatcttttagccagtgcaagttcagatgggaagatttttattcggaaaattgta
gagggctttggtgatgatgaaaaaatacagataacagagcaaactctcttggctattcag
attgcaggtgattgggagtcagttcatccacgtttatgttggcattctcatcaacaggat
gtgttagtagtgggaatcggaaagtatgtacttaaaattgatattgtgaaagcaagatcg
gctacacgtggtggtggtggtgcatctgaagagcctgtcaaattcaatgtcgataaccca
gttgaaggagtctattgcatgggtaaacatgatggagatgtcacagatttgtctataagt
caatggacacgttgggtgtcagcatccaaagatggaacggtgcaaatttggggagacaag
aagattcttcctcttgcaacattcaagcctcatgacgcccaatctgttagctcagttgca
tttttgacagtaccccgtcggtctgatcacatagttcttctaacagcagggcctctgaat
cgacaactgaagttatgggtttctgcaagttcagacagtatgttgatgtcatcagattca
gaaaagtggcagtgtatccagactcttgatcttaagagttcttcagaacggcatgaaaat
gctttttttaatcaagttttagttctaccccgggcaaatctgattttactggcaaatgca
aaaaggcatgctatatatgcagtacacatggactttggttctaatcctgcagctacaagg
atggattatcttgcagagttttctgtaacaatgcctattttaagtcttactgctacaagt
gacaatgcggctgatggtgaagggatagttcaggtttactgtgtccaaccccaggcgatt
caacaatatgcccttgatttgtctctatgtgtgccactgccaccacctgtagaacttgta
gcttcagagaaggaaatttctaccactcgtatgtttgaagtatccccctcttcagcattt
acacctgtagaaccatctcatggtaacagtgcagttcatacaactgcaagtgatcctcaa
gccaaatcaccaggggccttgaatgttactgagaaggcactgatgagtagaagcccagtt
ttggtcagtaatatggatgcgtcaaatatacatgacccattggctatgtctggtgtggat
gccacttatggtatctctatgcctccagctattcgtactgatagtgcacctttatcttct
caagttcccgtccctttaagtccgagtttccatggaagacaacaaccaccaaaaagtcca
tctagaaccattgagcaaggggtagtacctgtttcttctgctggagaccaagaatataca
acacgacctgatatgacttcttttgagacaattactacaaatcgtaaagtggatgacagt
ttcaagaaagatgatgaaaagctaggtcaaaatcaaccgtccaccacaatgaatactaca
atttccattgagagccaaataagttccaacccaactcatcttgtaactccttcacagctc
atgtctttagcaatgccatctcttgataagaaggaaataaagaaaggggataacaagcat
gaagatgctaatgttaataaggtgaacgagaacatgaaacctgaaactaaagatgcagct
attactagcttgcatcagccagaggaattaggtttgtataaacaagttgaaaacacatct
attcttatagatacaaaagagaaggtatttgctacacaagcttcagaaaactgtagtgag
aatgcaagacaggcagattctttgtctgcagaagttcaaaacataagagaaaatcaaagt
ggtggtgatggggaaattttcaaggaaagagaacagccttcagacaatattcaaggaaac
acagagatgactggtaaggcctctgaatctaccttattaccatcaatatcacagtcgcct
tcactgggaaagggtaaaaagataaaaaataaagcttgtttagtgtcaggtccttcatca
acatcagtaagtcctttcacttcagcgggctcttctgatggtgagccaagcagcaccaca
agcattccttcaattgaagctgtctcttctcaggtttcagcaatgcaggatgcacttaat
cagctcattgcccttcagaaggatctgcaaaacaagatgagtatgatggtgtctatacct
gttacaaaggaggggaagagactggaggctgtcctaggtcaacgtatagagaaggtaatg
aaagctcatacagatgctatgttggcaagatttcaggaggagaatgcaaagcgtgagaaa
gcagaacgcgagcatgtgcaacagatgacatcactatcaaatgcaatcaataaagacctt
cctaccatatttgagcgtgttttgaaaaaggagtttagctctctaggccctaatgtggca
cgcatggttactccaagtctggagaaagcaatctcaactgcaattaatgatgcattccag
aaaggaattagcgacaaagcattgactcagctggagaagtcagttggaagcaagctagat
tctcttgtgacaaggcaaatccagtcacaatttcagtcatctggaaagcaggctcttcag
gaagcattacgaacaagttttgagacttcaattattcctgcctttgagcgatcctccagg
gcaatgtttgagcaagtagatgctgcatttcaaaaagggatggcagagcacacagcttct
gttcagcagcaatttgcaggttcccattcaggtcttgcatgtactcttcaggatactgtt
gcctctgcatcgtctcttgctcaagcactcaaaggtgagttggcagatggacaacgcaga
ctgttagcacttgcagagggagcaggaacaagttcaacacgtctgcccacattgaacacc
aaacagggaaatggtggcctcattggtttgcctgataaggccatatcgcttaaacattta
gaagaaactcttgatccaacaaaagaactttccagattggttggtgaatgcaaatttgag
gaggcatttcataaagctcttcaaatgagtgatgtttcaattgtttcatggttgtgttct
caggttgatccacattctctgttgtcaacaattcctcttcccttgagtcaaggagtcctt
ttggctctagttcagcaacttggctgtgatctttcaaaggatatggctagaaagctgatt
tggataagagaggctgcccttgccctcaatccaaatgatcatttacttgcaccacatatg
cggccaattcttgaacagctatatcaaaatttgcatagacaaatgattgtcactagtcca
gcagagacgagttctcttcgtttgcttctacatgtggttaattctatcttgacagcatgc
aaataa
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