Cryptomeria japonica (Japanese cedar): 131042453
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Entry
131042453 CDS
T10556
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cjf03009
]
131042453
Ribosome biogenesis [BR:
cjf03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
131042453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
WDR55
WD40_RFWD3
NBCH_WD40
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_IP5PC_F
WDR90_beta-prop_4th
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
131042453
NCBI-ProteinID:
XP_057831714
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All DBs
Position
1:complement(634032210..634186639)
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AA seq
306 aa
AA seq
DB search
MVENSQEDMSSVCLHSWFEHKSSITDLAISSGGSSSVAISCSLDCTCKVWRLGNGTLQQT
FTFPGEIKAITLDPGDRLLFAGSVDGTIFVNELDIGLQGTSDVATENQSSMLIGHRGSIT
ALAFTTNQLWLVSAAEDCTARIWDVVTGHVIRIFNHRKGQITNILVIPQILFHAKGCQKN
SSKGCLPGIPVSSLEKSSKPRTRLEETVAIIPSYCSLEEELAQSRSYSAASMKQQILDLE
QEWSPEAIQMKVESSVENRMQATSMIKNLIEVNKNLQSKFLDMIQNRLCPKSDDVKSKMK
SAFDST
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggtagagaattcgcaagaagatatgtcctcagtttgtttacattcctggtttgaacac
aaaagctcaataactgatcttgcaataagctctgggggatctagctcagttgctatttcc
tgttctttggattgtacatgcaaggtgtggagacttggcaatggcacgttgcagcaaaca
tttacatttccaggggagataaaagctattacactagatcctggagacagattactattt
gctggatctgtggatggaacgatatttgtcaatgaacttgacattggattgcagggtact
agtgatgttgctacagagaatcagtcatccatgttaattggccataggggatctattaca
gctctagccttcacaacaaatcaattgtggctggtatctgctgcagaagattgcactgca
cgcatatgggatgtagttactggccacgttattcggatattcaaccataggaaaggacaa
ataacaaatatcttggtaattccacaaatcttgtttcatgcaaagggttgtcagaaaaac
agcagcaaaggatgtttgcctggtataccagtttcttctttagaaaagtcctcaaagcca
agaaccagattggaagaaacagtagcaatcataccttcatactgttcattggaggaagaa
cttgctcaaagtagatcatatagtgcagcttcaatgaagcaacaaatcctagatctcgag
caagagtggtctccagaagcaatacagatgaaggttgaatctagtgtagagaaccgcatg
caggctacgagcatgatcaaaaacttgatcgaggttaataaaaatttacagtcaaagttt
cttgacatgatacaaaatcgattgtgtccaaaatctgatgatgttaagtcgaaaatgaag
tctgcttttgacagcacatga
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