Cryptomeria japonica (Japanese cedar): 131042543
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Entry
131042543 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131042543
03420 Nucleotide excision repair
131042543
03430 Mismatch repair
131042543
03440 Homologous recombination
131042543
03460 Fanconi anemia pathway
131042543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131042543
03032 DNA replication proteins [BR:
cjf03032
]
131042543
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131042543
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131042543
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131042543
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131042543
MMR (mismatch excision repair)
131042543
DSBR (double strand breaks repair)
HR (homologous recombination)
131042543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
OB_MEIOB_N
DUF223
Motif
Other DBs
NCBI-GeneID:
131042543
NCBI-ProteinID:
XP_059066217
LinkDB
All DBs
Position
8:154202853..154205188
Genome browser
AA seq
610 aa
AA seq
DB search
MASPAASQQPSTETSEVEQHLQLTPHALLCINAGDDVPSPLLQLLSFEKLIDDENDNARY
KVVLSDATHMQLAILPPKYSGLLLSETLKIGTILSLTAYACRNVWNSRTIIIFSLAVKFT
NSPLLGKPRYLFKEQEQQMLGRDAPATTKRSLKFGIHLPPVQHESSVNISPIKALNPFQN
KWTIKGRVTNKRKMHQYSTPKSTGQVFSFDMIDSEGTEIRITCFGDVAEMHYHRVEPGTY
YTVSKGCVKEANTKWNKLNSHLEITLDNNSILKRCDDVVECEANNSQFTPINEITYCTNN
TLVDVIGIVVAVGEPSLIRRKDGSEVTKRIVKINDASAFTIDVNLWGETWQGLGEDLKSM
HTTQAAVVLAVRNARVGYFNGKVVNTTTATTLNINPSIPETETLMSRGKISDALLPQSCV
AGQLNSQYSRMTITAVLERTSVLSETVETTIRAVVRIIKTDSFCYPACPLKFNGKECKKK
CTQQSDNQWFCSRCQTAVPECNYKYLLQMKLQDHTGALWATAFDEVGTNILQISAKELYM
LQYDLTTQKTPQSIIKHVLLSSFVFTLSITTDMYNSEPRLKATITKVARIDYQTENALLL
AEIAQMTTTA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgctgcctcgcaacaaccttctacagaaacttcggaagtggaacaacat
ctacaattgaccccacatgcactgctctgcatcaacgctggggatgatgtcccctctcca
ctgcttcagcttttgtcttttgaaaaattgatagacgatgaaaatgacaatgcccgatat
aaggttgttttgtctgatgccacacacatgcaattggcgatcctcccacctaagtatagt
ggtttgctgctttcagagacattaaagattggcactatcctatcattgacagcctatgct
tgtagaaatgtttggaactcaaggactataataatattcagccttgctgtcaaatttacc
aattctccattgcttgggaaacctagatatctgtttaaagagcaagaacaacaaatgttg
ggtcgagacgcacctgccacaactaaacgatcccttaaatttggaattcacctcccacct
gtgcagcacgaatcttctgttaatatcagcccgattaaagccttgaaccccttccaaaat
aaatggacaataaaggggcgtgtgacaaacaagaggaagatgcatcaatacagtacacca
aagtccactggccaagtatttagctttgacatgatagatagtgaaggtactgaaattagg
ataacttgctttggcgatgtagcagaaatgcattatcatagggttgaaccaggaacatat
tatactgtgtcaaaaggttgcgttaaagaagctaacactaaatggaataagcttaacagc
catcttgagataactttggacaacaattcaatattgaagcgttgtgatgatgttgttgaa
tgtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaac
actttagttgatgttattggtattgtagttgctgttggagaaccctcattaattcgcagg
aaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcagcttttact
atcgatgttaacttatggggagaaacatggcaagggctaggtgaagatttgaagagcatg
cacacaacccaagcagctgttgtccttgcagtcagaaatgctcgtgttggttatttcaat
ggaaaggtggtcaacacaaccacagcaacaaccctaaatataaacccttctatacctgaa
acagagacacttatgtcaagaggaaagatttcagatgcccttctaccgcaatcatgtgtt
gctggccagcttaactcacagtacagtagaatgacaatcacagctgttttagagcgtaca
agtgttctctctgaaacagttgaaactactattagggctgttgtgagaatcattaaaact
gattctttttgctatccagcctgccctttgaaatttaatggaaaagaatgtaaaaagaaa
tgcacccagcaaagtgataatcaatggttttgttcaagatgtcaaactgctgtgccagaa
tgcaattacaaatacttattgcagatgaagctccaagatcatacaggggctctttgggct
actgcctttgacgaggttggcacaaatatactgcaaatatctgccaaggagctttacatg
ctgcagtacgatttgactacacaaaaaacgcctcagtccattatcaagcatgtccttttg
tcttcctttgttttcacactctctattacaacagacatgtacaattcagaacccaggctc
aaagcaacgataaccaaagttgccagaattgattaccagactgaaaatgctcttttgctt
gcagagattgctcaaatgactacaactgcatag
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