Cryptomeria japonica (Japanese cedar): 131044557
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Entry
131044557 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131044557
03420 Nucleotide excision repair
131044557
03430 Mismatch repair
131044557
03440 Homologous recombination
131044557
03460 Fanconi anemia pathway
131044557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131044557
03032 DNA replication proteins [BR:
cjf03032
]
131044557
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131044557
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131044557
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131044557
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131044557
MMR (mismatch excision repair)
131044557
DSBR (double strand breaks repair)
HR (homologous recombination)
131044557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
ThsB_TIR
DUF223
SH3_Rv0428c
DUF2147
Motif
Other DBs
NCBI-GeneID:
131044557
NCBI-ProteinID:
XP_057833892
LinkDB
All DBs
Position
9:214982767..214984611
Genome browser
AA seq
580 aa
AA seq
DB search
MNAGDDIPSPLLQLLSFEKMVGDPDDNDRYKIVLSDGTYMQLAILPPKYADLLHAETLKI
GSLLLLTNYVCRYIWSTRTIIIFTLDVKKMNCDLVGKPRYLFKEQEEQMLDRETPPSTKR
SLKFGADLPSPQNAPSEIISPIKSLNPFQNNWTIKGRVTNKRKMHQYNTTKRNGQVFSFD
IIDEEGCEIRITSFDEIAKLHYHRVEQGASYVVSKGSVKDANTVYNKLNNHLEIILTETS
VLKWCAPNIAEPSKKTHFTPINEVLTTTNNTLVDVIGAVVNIGEIFVIRRKDGSIVNKRI
VKINDMSTLTIDVNLWGPPSEQLGNDLKNMHAFGTFVILAVQNARVRYFNGKIINISAST
TFEINPSILEADPLHLRGHVQQCLDSHSLDVHAKNNQYQRMSIASILERLSVVPETIETT
ITAVLRFIKGEQFYYTACPLQFNGKECKKKCSKLAENLSLCPRCQTQFPECNYKYLLQMK
LQDQTGTVWASAFDKVGTELLALSAKELYMLQYELTTKKTPRSILNEAMFNQNCCIVLVS
SDTYNSKCRIKVTIKKAQRLDFEAECSYLLAEIARMGATA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctggagatgatatcccttccccattgctgcagctcttgtcatttgaaaaaatg
gttggtgatccagatgacaatgatagatacaaaatagtcttgtctgatggcacgtatatg
cagttggccattttgccacctaagtatgctgacttgttacatgctgagacattgaagata
ggttctctccttctgttgacaaactatgtttgtcgatacatttggagcacaaggaccatc
attatattcactttggatgtcaaaaaaatgaattgtgatttggttggaaaacccagatac
ctctttaaagaacaggaagaacaaatgttggaccgagaaaccccgccatccactaaacgc
tctcttaaattcggtgcagatctaccttctccacaaaatgctccctctgaaattatcagc
cctattaaaagcttgaaccctttccaaaacaattggacaataaaaggccgagtcacaaat
aaaaggaaaatgcatcaatataatacgacaaaacgcaatggccaagtttttagttttgat
attatagacgaagagggttgtgaaattagaattacttcctttgatgaaatagcaaaattg
cactatcaccgagttgaacaaggagcttcatatgttgtttccaaaggttctgtaaaagac
gcaaacacagtatacaataagcttaacaaccaccttgagattatcttgactgaaacttca
gttttgaagtggtgtgcccctaatattgctgagccaagtaaaaaaacccacttcacccct
attaatgaagttctcaccaccaccaacaatactttggttgatgttattggtgctgttgtc
aatatcggagagatttttgtaattcgtagaaaggatggatctattgtaaacaagagaata
gtaaaaataaatgatatgtcaactttgacaattgatgttaacctttgggggccgccatca
gaacagctaggcaatgacttgaagaatatgcatgcatttggaacatttgtcatccttgct
gttcaaaatgcaagggttaggtatttcaatggaaaaattattaatatttcagcgtcaaca
actttcgaaattaacccttccatccttgaagcagaccccctccatttaagaggccatgtc
caacaatgccttgattcacactctttggatgtgcatgcaaaaaataaccagtaccagaga
atgtccattgcatccatccttgaacgtcttagcgttgtgcctgaaaccattgagactact
attacagctgtcctacgattcataaagggcgaacagttttattatacagcttgcccatta
caattcaatggtaaagaatgtaaaaagaaatgtagtaaactagctgagaatttgtcgctc
tgccctcggtgtcaaacacaattccctgaatgtaattacaaatacctcctacagatgaag
ctacaagatcaaacaggcactgtttgggctagtgcatttgataaggttggtacagaactc
ttggctctatctgcaaaggaattatatatgctgcaatatgagttaacaaccaaaaaaaca
cctcgcagcatacttaatgaagctatgttcaaccaaaattgttgtatagttttggtgtct
agtgacacatacaactctaagtgtagaataaaagtaacaatcaagaaagcgcagaggctc
gattttgaagctgagtgcagctacttgcttgcagagattgccagaatgggagcaactgca
tga
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