Cryptomeria japonica (Japanese cedar): 131045553
Help
Entry
131045553 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131045553
03420 Nucleotide excision repair
131045553
03430 Mismatch repair
131045553
03440 Homologous recombination
131045553
03460 Fanconi anemia pathway
131045553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131045553
03032 DNA replication proteins [BR:
cjf03032
]
131045553
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131045553
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131045553
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131045553
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131045553
MMR (mismatch excision repair)
131045553
DSBR (double strand breaks repair)
HR (homologous recombination)
131045553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
CDC24_OB3
Rep-A_N
OB_MEIOB_N
Motif
Other DBs
NCBI-GeneID:
131045553
NCBI-ProteinID:
XP_057835129
LinkDB
All DBs
Position
10:complement(734295180..734297516)
Genome browser
AA seq
610 aa
AA seq
DB search
MASPAASQQPSTETSEVELHLQLTPHALLCINAGDDVPSPVLQLLSFEKLIDDENDNAWS
KVVLSDATHMQLAILPPKYSGLLLSETLKIGTILSLTAYACRNVWNSRTIIIFSLAVKFT
NSPLLGKPRYLFKEQEQQMLGRDTPATTKRSLKFGIHLPPVQHESSVNISPIKALNPFQN
KWTIKGRVTNKRKMHQYSTPKSTGQVFSFDMIDGEGTEIRITCFGDVAKMHYHRVEPGTY
YTVSKGCIKEANTKWNKLNSHLEITLDNNSILKRCDDVVESEANNSQFTPINEITYCTNN
TLVDVIGIVVAIGEPSLIRRKDGSEVTKRIVKINDASTFTIDVNLWGETWQGLGEDLKSM
HTTQTAVVLPVRNARVGYFNGKVVNTTTTTTLNINPSIPETETLMSRGNISDALLPLSCV
AGQLNSQYSRMTITAVLERTSVLSETVESTIRAVVRIIKTDSFCYPACSLKFNGKECKKK
CTKQSDNQWFCSRCQTAVPECNYKYLLQMKLQDHTGALWGTAFDEVGTNILQISAKELYM
LQYDLTTQKTPQSIIKHVLLSSFVFTLSITIDMYNSEPRLKATITKVARIDYQAESALLL
AEIARMTTTA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgctgcctcgcaacaaccttctacagaaacttcggaagtggaactacat
ctacaattgaccccacatgcactgctctgcatcaacgctggggatgatgtcccctctcca
gtgcttcagcttttgtcttttgaaaaattgatagacgatgaaaatgacaatgcctggtct
aaggttgttttgtctgatgccacacacatgcaattggcgatcctcccacctaagtatagt
ggtttgctgctttcagagacattaaagattggcactatcctatcattgacagcttatgct
tgtagaaatgtttggaactcaaggactataataatattcagccttgctgtcaaatttacc
aattctccattgcttgggaaacctagatatctatttaaagagcaagaacaacaaatgttg
ggtcgagacacacctgccacaactaaacgatcccttaaatttggaattcacctcccacct
gtgcagcacgaatcttctgttaatatcagcccgattaaagccttgaaccccttccaaaat
aaatggacgataaaggggcgtgtgacaaacaagaggaagatgcatcaatacagtacacca
aagtccactggccaagtgtttagctttgacatgatagatggtgaaggtactgaaattaga
ataacttgctttggcgatgtagcaaaaatgcattatcatagggttgaaccaggaacatat
tatactgtgtcaaaaggttgcattaaagaagctaacactaaatggaataagcttaacagc
catcttgagataactttggacaacaattcaatattgaagcgttgtgatgatgttgttgaa
agtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaac
actttagttgatgttattggtattgtagttgctattggagaaccatcattaattcgcagg
aaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcaacttttact
atcgatgttaacttatggggagaaacatggcaagggctaggtgaagatttgaagagcatg
cacacaacccaaacagctgttgtccttccagttagaaatgctcgtgttggttatttcaat
ggaaaggtggtcaacacaaccacaacaacaactctaaatataaacccttctatacctgaa
acagagacacttatgtcaagaggaaatatttcagatgcccttttaccgctatcgtgtgtt
gctggccagcttaactcacaatacagtaggatgacaatcacagctgttttagagcgtaca
agtgttctctctgaaacagttgaaagtactattagggctgttgtgagaatcattaaaact
gattctttttgctatccagcctgctctttgaaatttaatggaaaagaatgtaaaaagaaa
tgcaccaagcaaagtgataatcaatggttttgttcaagatgtcaaactgctgtgccagaa
tgcaattacaaatacttattgcagatgaagctccaagatcatacaggggctctttggggt
actgcctttgatgaggttggcacaaatatactgcaaatatctgccaaggagctttacatg
ctgcagtacgatttgactacacaaaaaacacctcagtccattatcaagcatgtccttttg
tcttcctttgttttcacactctctattacaatagacatgtacaattcagaacccaggctc
aaagcaacgataaccaaagttgccagaattgattaccaggctgaaagtgctcttctgctt
gcagagattgctcggatgactacaactgcatag
DBGET
integrated database retrieval system
