Cryptomeria japonica (Japanese cedar): 131045843
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Entry
131045843 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131045843
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131045843
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131045843
MMR (mismatch excision repair)
131045843
DSBR (double strand breaks repair)
HR (homologous recombination)
131045843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131045843
NCBI-ProteinID:
XP_059073512
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Position
3:477296494..477298240
Genome browser
AA seq
552 aa
AA seq
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MATLIANAIPDILAGMSLVDPSLQVTAIHSIQQPHSTNVKYRLKLSDGMHTHPTLLPNQM
NSLVLEEALVTGSILCLTEYSCKIFDKYTAIIILSFDIISNNAAIIGSPTPLLQAIAYLP
SNSSEDPLNPFPIIPIKTLTPYHKQWSIQGRALAKTPIHNFKNVGCDGKVFGFDFVDMLG
SEIHVTCFNELVDNFYHVIHSGSLYVISNGRIKVANTKYSSSTNPFEIILHDSSIVTPTT
CIDSTIPKHSFHIKSIDSLQSFPINALVDVIGIVLSISPTSTIRKRDGTETIKCTATIID
MSSCTIDITFWGRHCQIEGKQIFEMSLEPNPPVLLIKSGRIVSWNGKSLDTIFSTTLLIN
PDLLETTTLQTWYAKKGVDEPYISLSQTNLSPHTFENPIDISSITDESFPGQKNVCVKAT
ITKLHLDNFYYLSCPQVVNKKKCKKKVVQSSPNTFQCPKCSTDLSECDFSYMLKMDLQDE
TGELLKVTAFEGPSNTLLGVPAEDFQLLLAEPNAVEPSNVIDCKFFFDLNIKMVPFAGQE
TQSIVITAIKPT
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcaacattaattgcaaatgccataccagacattcttgcaggcatgtctcttgttgac
ccttctttacaagttacagcaatacattccattcaacaacctcattctacaaatgtcaaa
taccgcctaaaactctctgatggtatgcacacccatccaacattgcttcctaaccaaatg
aacagtcttgttctagaagaagctttagtcacgggttctattctctgccttacagaatat
tcttgcaagatattcgacaaatacacggctattataattcttagcttcgacataatttca
aataatgcagctatcattggatctccaactccactcctacaagctattgcctaccttcca
tcaaatagttctgaagacccattgaaccctttcccaattattcccattaaaacattgacc
ccatatcacaaacaatggtccattcaaggtcgagcattagcaaaaacccctattcacaat
ttcaaaaatgtaggatgtgatgggaaagtttttggatttgattttgtagacatgttagga
tctgaaatacatgtgacttgttttaatgaacttgttgataacttttaccatgttattcac
tctggtagtctttatgtgatctccaacggtcgtattaaagtggcaaacactaaatatagt
agctccacaaacccttttgaaataatcctccacgactcttccatagtaactcctaccaca
tgcatagactctaccatacccaagcatagtttccacattaagagcatagattcactacaa
tcgttccctattaatgcccttgtagatgtcattggaatagttttatcaatctcccctaca
tcaaccatacgtaaaagagatggcactgagacaataaagtgtactgctacaatcatagac
atgtcaagttgtaccatagatattacattttggggtcgccactgtcaaatcgagggcaaa
caaatatttgaaatgtccctagaaccgaatcctcctgttcttttgatcaagtctggccgt
atagtatcttggaatggaaaatcacttgatactatcttttcaactacacttttaatcaat
ccagatttattggaaaccacaacattacaaacatggtatgctaagaaaggggttgacgaa
ccctacatttcattgtcacaaaccaacctttccccccacacatttgaaaatccaatagat
atttcatctattactgatgaaagctttcctggccaaaagaatgtatgtgtgaaggccact
attacaaaacttcacttagacaacttttactacctatcttgtccacaggtagtgaacaaa
aaaaaatgtaagaaaaaagttgtgcaaagttcacccaacacattccaatgcccaaagtgt
tctactgatctctctgaatgcgattttagctacatgcttaaaatggacttgcaagatgaa
acaggtgagcttcttaaagttactgcattcgaaggaccatcaaataccttgttgggtgtt
cctgcagaagatttccagctacttctagcagaacctaatgctgtggaacctagcaatgtt
attgattgcaaatttttctttgatctcaacatcaaaatggttccatttgctggccaagaa
acacaaagcattgttattacagccattaagcctacctaa
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