Cryptomeria japonica (Japanese cedar): 131046017
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Entry
131046017 CDS
T10556
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03022
Basal transcription factors
cjf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131046017
09124 Replication and repair
03420 Nucleotide excision repair
131046017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131046017
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131046017
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131046017
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131046017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
Motif
Other DBs
NCBI-GeneID:
131046017
NCBI-ProteinID:
XP_057835632
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All DBs
Position
3:complement(97352038..97607110)
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AA seq
614 aa
AA seq
DB search
METPLATMRATYKTKVKDPGTQGVLILTENKFTFTPNDPRSSSAHKLDVNFKTIKGHKFS
KEGSNTALLNLIQDLALKGGGFIFEFDNFQDRNVCRDLVANILAKYQPPATDGQSTLGAS
QRSELASTAIHGGQLSKEEMERRMKLLSEDSELQKLHKELVFGGVITETEFWATRKSMLE
EEAFTIAKQRTGLKSAMLADVRPMTDGRTNRVTFNLTPEIIHQIFAEKPAVHRAFLMNVP
KKMSEIDFWNKYCKAEYIHRTKSAAAAKAEADEDEELAVFLKDDDILANEARRKIRKVDP
TVDMASDFADDYTHLPDHGIVRDAGREGAEIGSKQPKRTLLQDINRHAAVVLEGKAFDSE
LGDTRTVAEALKRAKQAEITAETVDQGTEQRRLDRLNKMTEIDDLQGPRGLPFVPLYIKD
PRQYFDSQQANAVRALGEADSSINLNRDQFHPDEVYTSIGRQILEIKKHGMKDPVIYPDV
ALKVLNSLTQYISSTKYHLGKNPEKDILDKLPRKTKDELLEQWTTIQELLRHFWASYPLT
TAFLTNKVGRLKDAMTQIYQKLQSTKESVELEFRHQVSLLIQPMLQAIDAALAHHEAELQ
RKSAKSAPKVNGVI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagacaccactggcaacaatgcgtgccacatacaagactaaagtgaaggacccaggc
acacagggtgttttgattttgacagagaataagttcacattcactccaaatgatccaagg
tcgtcctctgctcacaagcttgatgtgaattttaaaaccataaaaggtcataagttcagc
aaagaaggttcaaacacagcacttttaaacctcattcaggatctggcactaaagggaggt
ggctttatctttgaattcgacaatttccaggaccgaaatgtctgccgagatcttgttgct
aacattcttgcaaagtatcagcctccagccacagatggacaaagtacactaggtgcctct
cagaggtctgaactggcctcaacagctatccatggtgggcaactcagtaaggaagaaatg
gaacgcaggatgaagttacttagtgaggatagtgagttgcagaaattgcacaaagaactt
gtttttggtggtgttataacagaaactgaattttgggctacaagaaagagtatgttagag
gaagaagcattcacaattgcaaagcagcggactggattaaaaagtgcaatgcttgcagat
gtccgaccaatgactgacggtcgtacaaatagagtaactttcaacctcacaccagagata
attcatcagatcttcgctgaaaaaccagctgtgcatcgtgcttttctaatgaatgtgccc
aaaaagatgagtgaaatagatttttggaacaaatattgtaaagcagaatacatccataga
acaaaaagtgcagctgctgcaaaagcagaagctgatgaagatgaagaacttgcagttttc
ctaaaagacgatgatatcttggcaaatgaggctcgccgaaagattaggaaggttgaccca
actgtagacatggcctcagattttgcagacgattatacacacttaccggatcatggaatt
gttcgggatgctggtagagaaggagctgaaataggtagcaaacagccaaaacgaacttta
ttacaagatatcaatcgacatgcagctgtcgttcttgaagggaaggcttttgattctgag
ctaggagatacaaggacagtagctgaggcacttaaaagagcaaagcaagctgaaataaca
gctgaaacagtagatcaaggaactgagcaaagacgtctggataggcttaacaaaatgact
gaaattgatgacttacagggccctcgtggccttccatttgttccactctatataaaggat
ccccgtcaatattttgattcacaacaagccaatgcagttagagctctaggagaggcagac
tcttccataaacttaaatagggatcaatttcatcctgatgaagtttatacttccatagga
cgacaaatcttggagatcaaaaaacatggcatgaaagatccagtaatttatcctgatgta
gcgcttaaggttcttaatagcttaactcaatatatttcaagtacaaagtatcaccttggg
aagaaccctgaaaaggacattctggataaacttcccaggaaaacaaaggatgaattgttg
gagcaatggacaacaattcaggaactacttcgacatttttgggcttcatatccacttact
actgcattccttaccaataaggtaggtcgactaaaagatgctatgacacagatatatcaa
aaattacagtcaaccaaggaatcggtagaattggaatttcgtcatcaagtttcattgctt
atccaaccaatgcttcaggcaatagatgcagctttggcacatcatgaagcagaactacaa
aggaaatctgccaaaagtgccccaaaggtcaatggagtaatttag
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