Cryptomeria japonica (Japanese cedar): 131046182
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Entry
131046182 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131046182
03420 Nucleotide excision repair
131046182
03430 Mismatch repair
131046182
03440 Homologous recombination
131046182
03460 Fanconi anemia pathway
131046182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131046182
03032 DNA replication proteins [BR:
cjf03032
]
131046182
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131046182
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131046182
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131046182
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131046182
MMR (mismatch excision repair)
131046182
DSBR (double strand breaks repair)
HR (homologous recombination)
131046182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF936
DUF223
ManC_GMP_beta-helix
Motif
Other DBs
NCBI-GeneID:
131046182
NCBI-ProteinID:
XP_057835838
LinkDB
All DBs
Position
2:50219044..50221338
Genome browser
AA seq
357 aa
AA seq
DB search
MSGTPAAFQHLFRFGFVMDLEVQPQLQLTPHAILCINAGDDVPSPVLQLLSFEKLTAEED
DSARYRVVLSDATHMQLVILPPKYSDLLLSETLKIGSILSLTAYACRNIWNSRTIVIFSL
AVKFTNSPLLGKPRYLFKEQEQQMLGRDTPTTTKHSLKFGIHLPPVQHESSVNISSIKAL
NPYQNKWTIKGRVTNKRKMHQYSTPKSTGQVFNFDMIDDEGTEIRITCFGDVAEMHYHGV
EAGTYYTVSKGCIKEANTKWNKLNSHLEITLDINSVLKRCDAVVDSQGNNLRFTSINEIT
YCTNNTLVDVIGIVVVVGEPSLICRKDGSEVTKRIVKINDVSTLLSMLTYGEQHGKG
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggactccagctgcatttcagcacttgtttcgttttggttttgttatggatttg
gaagtgcaaccacaactacaattgaccccgcatgcaatcttgtgcatcaatgctggggat
gatgtcccctctccagtacttcagcttttgtcttttgaaaaattgacagccgaagaagat
gacagtgcccgatatagggttgttttgtctgatgccacgcacatgcaattggtgatcctc
ccgcctaagtacagtgatttgttgctttcagagacattaaagataggctctatcctatca
ctgacagcttatgcttgtagaaatatttggaactcgaggactatagtaatattcagcctt
gctgtcaaatttacaaattctccattgcttggaaaacctagatatctgtttaaagagcaa
gaacaacaaatgttgggtcgggacacacctaccacaaccaaacattcccttaaatttgga
atacacctcccacctgtgcagcatgaatcttctgttaatatcagctcgattaaagccttg
aacccctatcaaaataagtggacgattaaggggcgtgtaacaaacaagaggaagatgcat
caatatagtacaccaaagtccactggccaagtgtttaattttgacatgatagatgatgaa
ggtactgaaattagaataacttgctttggcgatgtagcagagatgcattatcatggggtt
gaagcaggaacatattatactgtatcaaaaggttgcattaaagaagctaacacaaaatgg
aacaagcttaacagtcatcttgagataactttggacatcaattcagtattgaagcgttgt
gatgctgttgttgatagtcaaggaaataatttgcgattcacatcgattaatgaaattaca
tactgcaccaacaacactttagttgatgttattggtattgtagttgttgttggagaaccc
tcattaatttgcagaaaagatggcagcgaagtaacaaagagaattgtcaaaataaatgat
gtctcaactttactatcgatgttaacttatggggagcaacatggcaaggggtag
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