Cryptomeria japonica (Japanese cedar): 131046420
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Entry
131046420 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131046420
03420 Nucleotide excision repair
131046420
03430 Mismatch repair
131046420
03440 Homologous recombination
131046420
03460 Fanconi anemia pathway
131046420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131046420
03032 DNA replication proteins [BR:
cjf03032
]
131046420
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131046420
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131046420
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131046420
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131046420
MMR (mismatch excision repair)
131046420
DSBR (double strand breaks repair)
HR (homologous recombination)
131046420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep-A_N
REPA_OB_2
Rep_fac-A_C
BRCA-2_OB1
Motif
Other DBs
NCBI-GeneID:
131046420
NCBI-ProteinID:
XP_059065751
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All DBs
Position
1:complement(297108018..297109589)
Genome browser
AA seq
433 aa
AA seq
DB search
MNAGDDIPSPLLQLLSFKKMAGDPNDNDKYKIVLSDGTYMQLAILSPKYADLLHAETLKI
GSIVLLTNYTCRYVWNTRTIIIFTLDVKKTDCHLVGKPRYLFKEQEEQMLGRETPPSTKC
ALKFGVDLPSPQNAPSKNISLVKSLNPFQNNWTIKDEEGCEIRITSFDEIAELHYHRIEK
GASYVIPKGTVKDANTVYNKLNNHLEIILIETSVLKRSAPDLDETKKKISVIRRKDGCTV
NKRIVKINDMSTLTIDVNLWGPPSEQLGSDLKNMHASGTFVILAIQNARVGYFNGKVINI
SVSTTFEINPSISEANPLCLRGIVQQCLDPHSSVVHTKNNQYQRMSIASILQCLSIVSET
IETTITAVLRFIKQDQFYYTACPLQFNDKECKKKCSKLAENLWLCPRCQTQFPECNYIPP
ADETTRSYRQCLG
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctggagatgatatcccttcgccattgttgcagcttttgtcatttaaaaaaatg
gctggtgatccaaatgacaatgacaaatacaaaatagtcctgtcagatggtacatatatg
cagctagccattttgtcacccaagtatgctgacttattgcatgcagagacgttgaagata
ggttctattgttttgttgacaaactatacttgtcgatatgtttggaacacaaggaccatc
attatattcactcttgatgtgaagaaaacggattgtcatttggttggaaaacctagatac
ctctttaaagagcaggaggagcaaatgttgggccgtgaaaccccaccctccactaaatgt
gctcttaaattcggtgtagatttaccttccccacaaaatgctccctctaaaaatatcagc
cttgttaaaagcttgaaccctttccaaaacaattggaccataaaagacgaagagggttgt
gaaattagaatcacttcctttgatgagatagcagaattgcactatcatcgaattgaaaaa
ggagcttcatatgttattcccaaaggtactgtaaaggatgcaaacacagtatacaataag
cttaacaaccaccttgagattatcttgattgaaacttcagttttgaagcgatctgcccct
gatcttgatgagactaaaaaaaaaatttctgtaattcgtagaaaggatggttgtactgta
aacaagagaatagtaaaaataaatgatatgtcaactttgacaatagatgttaacctttgg
ggcccgccatcagaacaactaggtagtgacttgaaaaatatgcatgcatctggaacattt
gtcatccttgctattcaaaatgcaagggttggttatttcaatggaaaagtcattaatatt
tcagtgtctacaacttttgaaattaacccttctatttcagaagcaaacccactttgttta
agaggcattgtacaacaatgccttgatccacactcttcggttgtccataccaaaaataac
cagtatcaaagaatgtcaattgcatccatcctacaatgccttagcattgtgtcggaaacc
attgagactactattacagctgtcttgcgcttcataaagcaagatcagttttactataca
gcttgcccattacagttcaacgataaagaatgtaaaaagaaatgtagtaagttagctgag
aatttgtggctctgccctaggtgtcaaacacaattccctgaatgtaattacatacctcct
gcagatgaaactacaagatcatacaggcagtgtttgggctaa
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