KEGG   Cryptomeria japonica (Japanese cedar): 131046860
Entry
131046860         CDS       T10556                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03410  Base excision repair
cjf03420  Nucleotide excision repair
cjf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131046860
   03410 Base excision repair
    131046860
   03420 Nucleotide excision repair
    131046860
   03430 Mismatch repair
    131046860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjf03032]
    131046860
   03036 Chromosome and associated proteins [BR:cjf03036]
    131046860
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131046860
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131046860
  DNA Replication Termination Factors
   ELG1-RFC complex
    131046860
Chromosome and associated proteins [BR:cjf03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131046860
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131046860
  Check point factors
   HRAD17(Rad24)-RFC complex
    131046860
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 RCF1-5-like_lid AAA_11 AAA_5 AAA_22 AAA_lid_RFC1 AAA_assoc_2 AAA_16 AAA_14 DUF815 DNAX_ATPase_lid AAA_7 RuvB_N ResIII AAA_24 bpMoxR ATPase_2 DEAD AAA_30 nSTAND3 AAA_3 TniB AAA_19 AAA_2 nSTAND_NTPase5 SLFN-g3_helicase AAA_28 RNA_helicase Mg_chelatase AAA_25
Other DBs
NCBI-GeneID: 131046860
NCBI-ProteinID: XP_057836641
LinkDB
Position
9:54731965..54857600
AA seq 358 aa
MEDTAFMEIDEQFSLPNLNRGKEKIVNDAPDKKNAPWVEKYRPQSLADVAAHKDIIETID
RLTSENRLPHLLLYGPPGTGKTSTVLAMARKLYGSQYQNMILELNASDDRGIDVVRMQIQ
DFASTQSFSFSGKSNVKLVLLDEADAMTKDAQFSLRRIIEKYTKSTRFALICNYVHKIIP
ALQSRCTRFRFAPLDAANVTQRLRHIINAEQLDVTEGGLSAIVRLSSGDMRKALNILQST
QMASPQITEEAVYLCTGNPMPKDIERISFWLLNESFSNAYLYISEMKTAKGLALVDIIRE
IPMFIFNIKMPETIRVQLINALADIEYRLAFGTNEKLQLGSLISAFTHTRAALVAAAK
NT seq 1077 nt   +upstreamnt  +downstreamnt
atggaggatacggcatttatggaaatcgatgagcaattttctctccccaatttgaacaga
ggcaaagaaaaaatcgtgaacgatgctcccgataaaaagaatgctccctgggttgaaaaa
taccgcccccaatccctcgcagacgttgccgctcacaaagatatcatcgaaacaattgat
aggttgacgagtgagaataggctgcctcatcttctactttatggtccgcctggaactggg
aagacgtctactgtgctggccatggcacggaagctttatgggagtcagtaccagaacatg
atacttgaattgaatgcctctgatgacagaggaattgatgttgttcgaatgcaaattcaa
gattttgcaagcacccagagcttcagttttagtggaaagtcaaatgtgaagctagtatta
ttggatgaggcagatgccatgacaaaagatgctcagttttccttgcgtaggattatagag
aaatacaccaagagcacaagatttgctctcatatgtaattatgtgcataagatcattcca
gcattacaatcgaggtgtacaagatttcgttttgctccccttgatgctgcaaatgttaca
caacggctccgacatatcataaatgcagaacagcttgacgtcacagagggtggattgtca
gcaatagttagactcagtagtggtgacatgagaaaagctctgaacattttacagtctaca
cagatggcttctcctcaaataactgaagaagcagtctacctttgcacaggaaatccgatg
cctaaagatattgaacgaatatcgttctggttactaaatgagtcattttcaaatgcttat
ctttacatctctgagatgaagactgccaagggtctggctcttgttgatattataagggag
attcccatgtttatcttcaatatcaaaatgccagaaactattcgtgttcagcttattaat
gctttggctgatattgagtataggttggcttttggaacaaatgaaaaactacaacttgga
tctcttataagtgcatttacgcatactcgtgctgcattggttgcagctgctaagtaa

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