Cryptomeria japonica (Japanese cedar): 131047283
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Entry
131047283 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131047283
03420 Nucleotide excision repair
131047283
03430 Mismatch repair
131047283
03440 Homologous recombination
131047283
03460 Fanconi anemia pathway
131047283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131047283
03032 DNA replication proteins [BR:
cjf03032
]
131047283
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131047283
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131047283
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131047283
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131047283
MMR (mismatch excision repair)
131047283
DSBR (double strand breaks repair)
HR (homologous recombination)
131047283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep-A_N
tRNA_anti-codon
REPA_OB_2
Motif
Other DBs
NCBI-GeneID:
131047283
NCBI-ProteinID:
XP_057837130
LinkDB
All DBs
Position
7:complement(314101004..314108012)
Genome browser
AA seq
379 aa
AA seq
DB search
MTDAEDVPLVLRWLMMDAESVNVINEILLGEGYAVIGARLQGFWIVLATGFLIREQQGYK
VSELAPKIQLTPHAILSINASDDVPSPVLQLLSFEKLIDSEDDNARYRLILSNGTHMQLL
ILPPKYSELLLSDTLKIGSVLSLTACACRTVWNSRVIIIFKLVVKFTNSPLLGKPRYLLQ
EQEQAMFAREPTPTARRSLKFGMHIPPAQQETFQNIIPIKALIPFQNKWAIKGHVINKRK
MHQYNTPKSSGQVFNFDMIDAEGTEVRIMCFGDIAEMHYHRVEPGAYYYLSKGSIKEANT
KWNKLNSHLEITLDHNSTLKHCDPLVDVEGNASRFTPINELTNCSNNTLFNVIGVVIDVK
GVAVISRKDGSKVKKGLSK
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgcagaggatgtaccgcttgtgttgcgttggcttatgatggacgcagagagt
gttaatgtcattaatgagattttgttgggagaaggttatgcagtgattggagcaaggtta
caaggtttctggattgtgcttgcaactggatttcttattcgagaacaacaaggttacaag
gtttctgagctggccccaaaaatacaactaaccccacatgcaatcctctccattaatgcc
agtgatgacgttccatctccagtacttcagcttttgtcttttgaaaaattgatagacagt
gaagatgacaatgctcggtataggctcattctctctaatggtacacacatgcaactgtta
atcctaccaccaaagtatagtgaactgctactttcagacacattaaagataggatctgtg
ctatcattgacagcttgtgcttgtagaactgtttggaactcaagggttataataatattc
aagcttgttgtcaaatttacaaattcaccattgctcggaaaacctagatacttgcttcaa
gagcaagaacaagcaatgtttgctcgcgaaccaactcccacagctagacgttcccttaag
tttggaatgcacatcccacctgcacagcaagaaacctttcagaatatcatcccaataaaa
gctttgatccccttccaaaataaatgggcaataaaaggtcatgtaataaacaagaggaaa
atgcatcagtataatacaccaaaatcctctgggcaagtctttaactttgacatgatagat
gctgaaggtactgaagttagaataatgtgttttggtgatatagctgagatgcattaccat
agggttgaaccaggagcatattattatctgtcaaaaggttccattaaggaagccaacaca
aaatggaataaacttaacagtcatcttgagattactttggaccacaattcaacattaaag
cattgtgatccacttgttgatgttgaaggtaatgcttctcgattcacaccaatcaatgaa
cttacaaactgcagcaacaacactttattcaatgtcattggtgttgttattgatgttaaa
ggtgttgcagtaatatctagaaaagatggaagcaaagtgaaaaaagggttgtcaaaataa
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integrated database retrieval system
