Cryptomeria japonica (Japanese cedar): 131047360
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Entry
131047360 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131047360
03420 Nucleotide excision repair
131047360
03430 Mismatch repair
131047360
03440 Homologous recombination
131047360
03460 Fanconi anemia pathway
131047360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131047360
03032 DNA replication proteins [BR:
cjf03032
]
131047360
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131047360
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131047360
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131047360
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131047360
MMR (mismatch excision repair)
131047360
DSBR (double strand breaks repair)
HR (homologous recombination)
131047360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF8448
DUF223
POT1
Rv0428c_N
Motif
Other DBs
NCBI-GeneID:
131047360
NCBI-ProteinID:
XP_057837225
LinkDB
All DBs
Position
5
Genome browser
AA seq
610 aa
AA seq
DB search
MASPATSQQPSTETSEVEQHLQLTPHALLCINARDDVPSPLLQLLSFEKLIDNENDNARY
KVVLSDATHMQLAILPPKYSGLLLSETLKIGTILSLTAYACRNVWNSRTIIIFSLAVKFT
NSPLLGKPRYLFKEQEQQMLGRDTPATTKRSLKFGIHLPPVQHESSVNISPIKALNPFQN
KWTIKGRVTNKRKMHQYSTPKSTGQVFSFDMIDSEGTEIRITCFGDVAEMHYHRVEPETY
YTVSKGCVKEANTKWNKLNSHLEITLDNNSILKRCDDVVECEANNSQFTPINEITYCTNN
TLVDVIGIVVAVGEPSLIRRKDGSEVTKRIVKINDASTFTIDVNLWGETWQRLGEDLKSM
HTTQTAIVLAVRNAHVGYFNGKVVNTTTTTTLNINPSIPETETLMSRGKISDALLPLSCV
AGQLNSQYSRMTITAVLERTSVLSKTVESTIRAVVRIIKTDSFCYPACPLKFNGKECKKK
CTQQSDNQWFCSRCQTAVPECNYKYLLQMKLQDHTGALWATAFDEVGTNILQISAKELYM
LQYDLTTQKTPQSIIKHVLLSSFVFTLSITTDMYNSEPRLKATITKVARIDYQAESALLL
AEIARMTTTA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgctacctcgcaacaaccttctacagaaacttcggaagtggaacaacat
ctacaattgaccccacatgcactgctctgcatcaacgctagggatgatgtcccctctcca
ctgcttcagcttttgtcttttgaaaaattgatagacaatgaaaatgacaatgcccgatat
aaggttgttttgtctgatgccacacacatgcaattggcgatcctcccacctaagtatagt
ggtttgctgctttcagagacattaaagattggcactatcctatcattgacagcctatgct
tgtagaaatgtttggaactcaaggactataataatattcagccttgctgtcaaatttacc
aattctccattgcttgggaaacctagatatctgtttaaagagcaagaacaacaaatgttg
ggtcgagacacacctgccacaactaaacgatcccttaaatttggaattcacctcccacct
gtgcagcatgaatcttctgttaatatcagcccgattaaagccttgaaccccttccaaaat
aaatggacaataaaagggcgtgtgacaaacaagaggaagatgcatcaatacagtacacca
aagtccactggccaagtatttagctttgacatgatagatagtgaaggtactgaaattaga
ataacttgctttggcgatgtagcagaaatgcattatcatagggttgaaccagaaacatat
tatactgtgtcaaaaggttgcgttaaagaagctaacactaaatggaataagcttaacagc
catcttgagataactttggacaacaattcaatattgaagcgttgtgatgatgttgttgaa
tgtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaac
actttagttgatgttattggtattgtagttgctgttggagaaccctcattaattcgcagg
aaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcaacttttact
atcgatgttaacttatggggagaaacatggcaacgactaggtgaagatttgaagagcatg
cacacaacccaaacagctattgtccttgcagtcagaaatgctcatgttggttatttcaat
ggaaaggtggtcaacacaaccacaacaacaaccctaaatataaacccttctatacctgaa
acagagacacttatgtcaagaggaaagatttcagatgcccttttaccgctatcatgtgtt
gctggccagcttaactcacaatacagtaggatgacaatcacagctgttttagagcgtaca
agtgttctctctaaaacagttgaaagtactattagggctgttgtgagaatcattaaaact
gattctttttgctatccagcctgccctttgaaatttaatggaaaagaatgtaaaaagaaa
tgcacccagcaaagtgataatcaatggttttgttcaagatgtcaaactgctgtgccagaa
tgcaattacaaatacttattgcagatgaagctccaagatcatacaggggctctttgggct
actgcctttgatgaggttggcacaaatatactgcaaatatctgccaaggagctttacatg
ctgcagtacgatttgactacacaaaaaacccctcagtccattatcaagcatgtccttttg
tcttcctttgttttcacactctctattacaacagacatgtacaattcagaacccaggctc
aaagcaacgataaccaaagttgccagaattgattaccaggctgaaagtgctcttctgctt
gcagagattgctcggatgactacaactgcatag
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