Cryptomeria japonica (Japanese cedar): 131048393
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Entry
131048393 CDS
T10556
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131048393
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131048393
Translation factors [BR:
cjf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131048393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131048393
NCBI-ProteinID:
XP_057838325
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All DBs
Position
8:188773190..188860013
Genome browser
AA seq
1263 aa
AA seq
DB search
MPKGGKGGKGGRGGFAFGKRPVSEQNRISIDERLEQFRAGPDRVLTFENNLSNHDRAVVH
QVSQKMGFKSKSSGKGSNRRVSVYKTGPSQKGQSHATPLSFSVETQGVLRELFSRYPPRE
EEFTGKTKESTAALKRPTKLDRTPELSFCKPSMTQSEIATQVNMLVSRLQKSPALQQIAN
ERLKLPISSFKDTITSAVDSNQVVLIAGETGCGKTTQVPQFILDYMWSQGKACKLLCTQP
RRISATSVAERIASERGEKIGSTVGYQIRLESKGGKHSSLMFCTNGVLLRRLIESGSQLS
EAEAEGQSQKLRNLCSLDATHIIVDEIHERDRFCDFMLVILRDLLHSQPDLRLILMSATL
DAEKFSKYFNNCPIIRIPGFTYPVHTYYLEDVLTLVGFSKDGKSVNNDNNKNFLSENSSS
LTEEDRIAMDEAIGLAWLEDDFNLLMDIISGSPVPELCNYQHSLTQATALMVTAGKGRVD
DVSLLLSFGADCFLKAQDGSTALEWAQRHHQDEAAELILKHIEEKSHLQSATEEAELLKA
YMTSVNVDEVDVQLIEKLLIKICEYPTVTNSVSEPGAILIFLSGWEEISRCRERFQASPI
FSNSTKYLILPLHSMVPSAEQKKVFKRPPSGVRKIVLSTNIAETAITIDDIVYVIDSGRM
KEKSYDPYGNVSTLQTAWVSKASARQREGRAGRCQTGTCYHLFSKFRFAALPDYQVPEIK
RTPLEELCLQVKLQNPYCNISEFISKAIDPPVDLAVRNAITVLQDIGALTHDEKLTELGK
QLGSLPVHPSTSKMLLFAILMNCLDPALTLASVAGYREPFVLPMGPNEKKRAYAAKMDLI
AMYGGYSDHLAAIAAFDRWKQAKNREQQAEFCKKYYVSHSLMSMLDGMRKQLRRELAQKG
FIPWDADSCSLNAQHTGIVRAVIVSGLYPMVGTLLPPLPTGQKAVVQTARGEKVRIHPHS
SNFRLVHYNKQSNGSLKSPLLVFDEVTRGESQVFIKNCTLFKPYPLLLLATEMVVAPLDP
DDEMDDDEEDDEVSDSEEEDESLKTLPAEKQHHKIMSSPDKEVMVVIDRWFRFEATSLDA
AQLYCLRERLSAAVLYKIKHPRNNLPPILGESVFAAACMLSYDGGLDVETPTKREHQDFH
SRMMTVSDIRGGSSPIMNRISRQNGQRGGSSGTRTSIGTDADIYDDKGNTYQTKSSPGVS
PGNRNPRGSENGLLQNGFSRNVRQLYVPVRDGRVAYGNNRVEHSQEIPVLCNDTTSKRPR
GSR
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaggagggaaaggagggaaaggagggagaggaggatttgcgtttgggaagcgt
ccagtgtcagaacaaaatcgcattagtattgatgaacgtctcgaacagtttcgcgcagga
cctgaccgagtgcttacatttgaaaacaatttgagcaatcatgacagggctgtggtgcat
caagtgagccaaaaaatgggtttcaaatccaaaagttctggaaaaggaagtaaccgacgt
gtctccgtttataaaactggtccgtcacagaagggccaatctcatgcaacacctttatct
ttttctgttgagacacaaggtgtcctccgtgaacttttttcgcgatatcctccaagagag
gaagagtttactggaaaaacaaaggaatctactgcagcattgaagagacctactaagcta
gacagaacaccagaactaagtttttgcaagccttcaatgactcaatccgaaattgccacc
caagtgaatatgcttgtttctagacttcaaaaatccccagctttgcaacagatagcaaat
gaaagattgaagttaccaatttcatctttcaaggatacaattacttcagcagtggactct
aaccaggtcgtgcttatagcaggtgaaactggctgtggtaaaacaacccaggtcccacaa
ttcattttagattatatgtggagccaaggcaaagcttgtaaattactgtgtacacagcct
cgacgaatatcagcaacttcagttgctgagagaattgcttccgaaagaggagagaaaatt
ggaagcactgttgggtatcagataagactggaatcgaagggaggaaagcactcgtctcta
atgttttgtacaaatggagtcctgctacggagattgattgaatcaggaagtcaactttct
gaagcagaggcagaaggccaaagccagaagctgcgaaacttgtgttctttggatgcaact
catatcattgtggatgaaatccatgagcgggatcgtttttgtgattttatgctagttata
ctgagagatttactacattctcagccagatttacgcttgatattaatgagtgccactctt
gatgcggaaaagttttcaaagtattttaacaactgtccaatcattcgcattcctggattc
acttacccggtccatacatattatttggaggatgtactcactcttgtaggattcagtaag
gatggaaaatctgtaaataatgataataataagaattttttaagtgagaacagttcatcg
ctgactgaagaagacagaattgcaatggatgaggccatcggtttagcctggttagaggat
gattttaatttgctaatggatataatatcaggaagtccagttcctgaactttgtaattat
caacattccttaactcaagctacagcactaatggtcactgctggcaaaggtagagtggat
gatgtttctctgcttctctcctttggtgctgactgttttctaaaggcacaagatggaagt
acggctttagaatgggctcagaggcaccatcaagatgaagctgcagagctcatcttgaaa
cacatagaggagaaatctcatttacaatcagccactgaggaagcagagctgctaaaagca
tatatgaccagtgttaatgtggatgaggtggatgttcaacttatcgagaagttgttgata
aagatatgtgaatatcctactgtgaccaattctgtgtcagaaccaggagctatactgata
ttcttatctggatgggaggaaatatctcgttgcagagagcgcttccaagcatctcccatc
ttcagcaacagcacaaagtacctaattctgccactgcactctatggttccctcggcggag
cagaaaaaagtgttcaaacgcccacctagtggtgttcgaaagattgttctctccacaaac
attgctgaaactgcaataactattgatgatattgtctatgtaattgacagtggtcgaatg
aaagagaaaagctatgatccttatggtaatgtatctactcttcaaacagcatgggtatcc
aaggcaagtgcaagacaacgagaaggacgagctgggcgatgccaaacaggcacttgttat
catctcttctctaaattccgttttgcagcgttgcctgactatcaggtacccgagattaag
aggactcctcttgaggagctgtgtttgcaggtgaagctacaaaatccatattgtaacata
agtgaatttataagtaaggctattgatccaccagttgatcttgctgttcgtaatgctatc
acagtgctacaagatattggggctttaacacatgatgagaaacttacagaactaggaaag
cagctgggttctttgccagttcatccatcaacaagcaaaatgcttttatttgcaatattg
atgaactgccttgatcctgctttgacattagccagtgtagcaggctacagggagcctttt
gttttacctatgggaccaaatgagaaaaaacgagcttatgcagcaaagatggacctaata
gcaatgtatgggggttatagtgaccatttggcagcaattgcagcatttgatcgctggaaa
caagcaaagaatagggaacaacaagctgagttttgtaaaaaatattatgtttctcattcg
ttaatgtctatgttagatggtatgcgtaagcagttgcggagagagcttgctcaaaaggga
tttatcccctgggatgcagattcctgcagcttgaatgctcaacatactggtattgtacgt
gcagttatagtgtctggcttgtatccaatggttggaacattgttaccaccacttccaaca
ggtcagaaagctgtagtgcagactgccagaggtgaaaaggtccggattcatccacactca
tcaaatttcagattggtgcattataataaacaatcaaatggttcattgaaaagtccactg
ctggtatttgatgaggtaacgcgtggggagtcacaggtgtttatcaaaaattgtactctt
tttaaaccctatccattactcctccttgctacagaaatggtggttgcacctcttgatcct
gatgatgaaatggatgatgatgaagaagatgatgaagtaagcgacagcgaggaggaagat
gagagtcttaaaacacttcctgctgaaaagcaacaccacaagatcatgtcttcaccagat
aaggaagttatggtggttatagatcgttggtttagatttgaagcaacatcactggatgca
gctcaactttattgcttaagagagaggctttcagctgcagtattatacaaaatcaagcat
ccccgtaataatttgcctcctattcttggagaatcagtttttgctgctgcgtgtatgcta
tcctatgacggaggactagatgtggagactcctacgaaaagagaacatcaggactttcat
tcacggatgatgactgtttcggacattcgtggaggttcttcacccataatgaacaggata
tcgagacaaaatggtcaacggggaggctcgtcaggcacaaggacatcgatagggacagat
gcagatatatacgatgataaaggaaatacttatcaaacaaaatcaagccctggtgtcagt
ccaggaaacaggaacccccgaggatcagagaatggcctacttcaaaatggtttctcacgt
aatgtgaggcaactctatgtaccagttcgtgatgggagagtggcatatgggaataataga
gtagaacattcacaggagataccagtgctgtgcaatgacacaacatctaaaaggccccga
ggcagtagataa
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