Cryptomeria japonica (Japanese cedar): 131049100
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Entry
131049100 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131049100
03420 Nucleotide excision repair
131049100
03430 Mismatch repair
131049100
03440 Homologous recombination
131049100
03460 Fanconi anemia pathway
131049100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131049100
03032 DNA replication proteins [BR:
cjf03032
]
131049100
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131049100
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131049100
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131049100
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131049100
MMR (mismatch excision repair)
131049100
DSBR (double strand breaks repair)
HR (homologous recombination)
131049100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131049100
NCBI-ProteinID:
XP_057839103
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All DBs
Position
3:12740697..12750491
Genome browser
AA seq
428 aa
AA seq
DB search
MRVKSHDNCRSAVSIQRSMAAMGFGESCANSFGSRCDYFTRLPCELDNVTGLKLQGLLLC
FCCLTVCGCRYFHFASNLLLCASRILDLFMFFNCLWAWLLPLWKSFSRLLCEFHDVNALN
LQGLLICLRYLTVCGRDYFQFARQFRIALDIVVDLGCVVALSEWFQFARKDGSQTQKRVV
KINDLSGSTIDINLWGPMAEQKGLELKNMLANDSVVILALCNARVGYFNGKLINITVATT
LHINPTFLEAELLTLRGKDPLLVIPFVAKTIHIDGKYTRMTISSIREQMSIKPEKIQITL
LAVMRFVNVNDQNFYYAACPLIVNGRPCKKKCTQRVDDSWFWSRCQITIQDCNYSYLLPL
KLQDATGTLWAIAFDEGSIHLLHKTTKQLYALQNDATTTETTSSMIKRLLSRYYSFTLLV
STETYNLE
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtcaaatctcatgacaactgtcggtcggctgtcagcatacagcggtcaatggcg
gccatgggatttggtgaaagttgcgcaaattcgtttggttctcggtgtgactattttact
agacttccttgtgagcttgacaacgttactggtttgaagttgcaagggttgctgctttgt
ttctgttgcttaactgtttgtgggtgtcgctacttccattttgcaagcaatttgcttctg
tgtgcttccaggattctggatttgtttatgttctttaattgtttgtgggcgtggctactt
ccactttggaagtcattttcgaggctgctttgtgagtttcacgacgtgaatgctttgaat
ttgcaagggttgttaatttgtctacgttatttaactgtttgtggtcgtgactacttccaa
tttgctaggcaatttcgcattgctttggatatagttgttgacttaggttgtgttgtcgct
ctgagtgaatggtttcaatttgcaaggaaagatggcagtcaaacacaaaaacgtgtcgtg
aaaattaatgatctatctggttcaacgattgacattaacttatggggtccaatggcagaa
caaaagggcctagaattgaaaaatatgttggccaatgatagtgtggttatccttgctttg
tgtaatgctcgtgttggttatttcaatgggaagcttataaacataacagttgcaacaaca
ttacatatcaacccaacttttctagaagcagagcttctaacattaagaggaaaggaccct
ttgcttgtcataccctttgttgcaaaaactatccacatagatggcaaatatacaagaatg
acaatttcttcaatccgtgagcaaatgagcatcaaaccagaaaaaattcagataactttg
ctagctgttatgcgctttgtgaacgtaaatgaccaaaatttctattacgcagcatgtcca
ctaatagtcaatggaaggccttgcaagaaaaaatgtacacaacgagttgatgattcttgg
ttctggtctagatgtcaaatcactatacaagactgtaattatagttacctcttgccacta
aagttacaagatgccactggtactctatgggccattgcatttgatgagggtagcattcac
ttgctacacaaaactacaaaacaactttatgcactacaaaatgatgcaacaacaacagag
acaacttcctcaatgattaagagactactgtcacgttactattcattcacactgttggtt
tctactgagacatataatttagaataa
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