KEGG   Cryptomeria japonica (Japanese cedar): 131049771
Entry
131049771         CDS       T10556                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
  KO
K07466  replication factor A1
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03420  Nucleotide excision repair
cjf03430  Mismatch repair
cjf03440  Homologous recombination
cjf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131049771
   03420 Nucleotide excision repair
    131049771
   03430 Mismatch repair
    131049771
   03440 Homologous recombination
    131049771
   03460 Fanconi anemia pathway
    131049771
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cjf03000]
    131049771
   03032 DNA replication proteins [BR:cjf03032]
    131049771
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131049771
Transcription factors [BR:cjf03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    131049771
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    131049771
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     131049771
   MMR (mismatch excision repair)
     131049771
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     131049771
SSDB
Motif
Pfam: REPA_OB_2 tRNA_anti-codon DUF223 OB_MEIOB_N SH3_Rv0428c DUF2147
Other DBs
NCBI-GeneID: 131049771
NCBI-ProteinID: XP_057839822
LinkDB
Position
5:643531381..643532379
AA seq 332 aa
MLGRETPPPTKLALKFGADLPSPQNGPFENISPIKSLNPYQNNWTIKGCVTNKRKMHKYN
TPKRNGQVFSFDIIDEEGCEIRITSFDEIVELHYHRIEQGASYVLSKGTVKDANKVYNKL
NSQLEIILTETSVLKRCVPDAVGPDKKTRFTPIDELLTTTNNTLIDVIGVVVNVREISVI
RRKDGSVVNKRIVKINDMSTLTIDVNLWGPSSKQLGNDLKNMHTFGTFVILAVQNARVGY
FNGKVINASASTAFEINPSIPEAEPLRLRGPIQQSLNPHPSALHHKNNQYQRMSIASILQ
HLSVMSEAIETTITAVLRFIKEDPFYYTACPL
NT seq 999 nt   +upstreamnt  +downstreamnt
atgttgggtcgagaaaccccgccacccactaaacttgctcttaaattcggtgcagatttg
ccttccccacaaaatggtccttttgaaaatatcagccctattaaaagcttgaacccttac
caaaacaattggaccataaaaggttgcgtaacaaataagaggaagatgcataaatataac
acaccaaaacgcaatgggcaggtttttagttttgatattatagacgaagagggttgtgaa
attagaatcacttcctttgacgaaattgttgaattacactatcatcgaatcgagcaagga
gcttcatatgttctgtccaaaggtacagtgaaagatgcaaacaaggtgtacaataaactt
aacagccagcttgagattatcttgactgaaacttcagttttgaagcgttgtgtccctgat
gctgttgggcctgataaaaaaacccgcttcacccctattgatgaacttctcaccactacc
aacaatactttgattgatgttattggtgttgttgtcaatgtcagagagatctctgtaatt
cgtagaaaggatggctctgttgtaaacaagagaatagtaaaaataaatgatatgtcaact
ttgacaatagatgttaacctttggggcccatcctcaaaacaactaggcaatgacttaaag
aatatgcatacatttggaacatttgtcatccttgctgttcaaaatgcaagggttggttat
ttcaatggaaaagtcataaatgcatcagcgtccacagcttttgaaatcaacccttctatt
cctgaagctgagcccctccgtttaagaggccctatccaacaaagccttaatccacatcct
tcagctctccatcacaaaaataaccagtatcaaagaatgtcaattgcatccatcctgcag
caccttagcgttatgtctgaagccattgagactactattacagctgtgttgcgcttcata
aaggaagaccccttttactatacagcttgcccattgtaa

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