KEGG   Cryptomeria japonica (Japanese cedar): 131049947
Entry
131049947         CDS       T10556                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    131049947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cjf04121]
    131049947
   03036 Chromosome and associated proteins [BR:cjf03036]
    131049947
Enzymes [BR:cjf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     131049947
Ubiquitin system [BR:cjf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    131049947
Chromosome and associated proteins [BR:cjf03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     131049947
    Noncanonical PRC1 (PRC1.1)
     131049947
    Noncanonical PRC1 (PRC1.3/1.5)
     131049947
    Noncanonical PRC1 (PRC1.6)
     131049947
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-RING_UBOX zf-C3HC4_4 RAWUL zf-UDP zf-RING_6 zf-rbx1 zf-RING_4 zf-Nse zf-C3HC4_5 zf-RING_11 ZNF512_C2HC
Other DBs
NCBI-GeneID: 131049947
NCBI-ProteinID: XP_057840035
LinkDB
Position
8
AA seq 431 aa
MPAQMKEDDLEGEPSYSSEKNEYVLVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRE
CIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAAIYPDLDEYEEEEFTLHEEDKYR
NKQIQASIAQTLQRQLEAVASRRTTAKATAAAIVRKAHGKFRNVQNQNISNRGESRSKRQ
RNDIPTADEENTMLEHSTSGEEESQEYMKIRCKRRVSRSLCETSANIDNSSDDHDGVDRC
LAEVSRESTFASHGRGGNTEGLVWGKNGARSHMRYGSISGSNGKHARGTRIIKMVDYLLS
KAHEEDEIEFDIQVTLLPFNNDGNLISLESPYLCCRPTVSVQHLCKLLSLKLSIPAEDLE
IVMERKINPTETGSETKLPQLGKLGKGKSILDASKNKEVIEVLDQEATLTNIFNCIGCRG
SLVLMYRRRLE
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgccagcacaaatgaaagaggatgatttagaaggcgagccatcgtacagcagtgaaaaa
aacgaatacgttctggtcaaactgtctgatatccgcaaggaagtgcaatgtcctatttgc
ttggggattatccgaaaaacaaggacggtaatggaatgccttcaccgcttttgcagagaa
tgcattgacaagtcaatgcgtttggggaacaatgagtgccctgcatgtcgtacacactgt
gccagccgcagatcattaagagatgatccaaaatatgatgctctgattgcagcaatttat
cctgacctggatgagtatgaagaagaggagttcactttgcatgaagaagacaaatatcgt
aacaagcagatccaagcaagtattgcacaaacacttcagcggcaattagaagctgttgca
agtcgccgcaccactgcaaaggcaactgcagcagctatagtcagaaaagcacatggaaaa
tttcgaaatgttcagaatcaaaatataagcaacagaggagaaagtagaagcaaaagacaa
aggaatgatatacctactgctgatgaagaaaacacaatgctggagcactccacttctggt
gaagaagaatctcaagaatacatgaagataagatgtaaaagaagagtttcaagatcttta
tgtgaaacttcagctaatattgataatagcagtgatgatcatgatggagtagatcgttgc
ctagcagaagtgagcagagaaagtacttttgcctctcatggaagaggaggaaacacagag
ggtttggtttggggtaaaaatggtgcacggagtcatatgcgttatggaagcataagtgga
tcaaatggaaagcatgcacgaggcacgcgcataatcaagatggtggattatcttttgtct
aaagctcatgaagaagatgagatcgagtttgacatacaagtgacattgttaccgtttaac
aatgatggaaatcttataagtttggagagcccatatctctgctgccgcccaactgtatct
gttcagcatttgtgcaaattactttcccttaagctttccataccagctgaagatttagaa
attgttatggagagaaaaataaatccaactgaaacgggatcagaaactaaattaccacaa
ttgggcaagctgggaaagggaaaaagcatacttgatgcctcaaagaataaagaagtgatc
gaggtgcttgatcaagaagcaacacttacaaacatctttaattgtataggatgccgggga
agccttgttttgatgtatcgacgcagattggaatga

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