Cryptomeria japonica (Japanese cedar): 131049965
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Entry
131049965 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131049965
03420 Nucleotide excision repair
131049965
03430 Mismatch repair
131049965
03440 Homologous recombination
131049965
03460 Fanconi anemia pathway
131049965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131049965
03032 DNA replication proteins [BR:
cjf03032
]
131049965
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131049965
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131049965
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131049965
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131049965
MMR (mismatch excision repair)
131049965
DSBR (double strand breaks repair)
HR (homologous recombination)
131049965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep-A_N
REPA_OB_2
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
131049965
NCBI-ProteinID:
XP_057840064
LinkDB
All DBs
Position
2:175223012..175224089
Genome browser
AA seq
324 aa
AA seq
DB search
MNAGDGIPSPLLQLLSFEKMVGDPNDNDRYKIVLSDGTYMQVAILPPKYVDLLHAETLKI
GSILLLKNYACRYVWNTRTIIIFTLDVKKMDCHLVGKPRYLFKEQEEQMLGRETPPSTKR
ALKFNADLPCPQNAPSENISPIKNLNPYQNNWTIKGHVTNKRNMHQYNTPKCNGQVFSFD
IIDEEGCEIRITSFDEIAELHYHQVEKGASYVLSKGTIKDASTIYNNLNSHLEIILTETS
VLKRSTPDAVETGKKKKRSFTPINEILTTTNNTLIDVIGVVVNVGEISVIRRKDGSTVNK
RIVKINDMSTLTIDVNLGARHQNN
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctggagatggtatcccttcgccattgttgcagcttttgtcgtttgaaaaaatg
gttggtgatccaaatgacaatgacagatacaaaatagtcttgtcagatggcacgtatatg
caggtagccattttgccacccaagtatgttgacttgttgcatgcagagacgttgaagata
ggctctattcttttgttgaaaaactatgcttgtcgatatgtttggaacacaaggaccatc
attatattcactcttgatgtgaaaaaaatggattgtcatttggttggaaaacctcgatac
ctctttaaagaacaggaagagcaaatgttgggccgagaaaccccaccctctactaaacgt
gctcttaaattcaatgcagatttgccttgcccacaaaatgctccctctgaaaatatcagc
cctattaaaaacttgaacccttaccaaaacaattggaccataaaaggccacgtaacaaat
aagaggaatatgcatcaatataacacgccaaagtgcaatggccaggtttttagttttgat
attatagatgaagagggttgtgaaattagaatcacttcctttgacgaaatagcagaattg
cactatcaccaagttgaaaaaggagcttcatatgttctttccaaaggtactataaaagat
gcaagcacaatatacaataatcttaacagccaccttgagattatcttgactgaaacttca
gttttgaagcggtctacccctgatgctgttgagactggaaaaaaaaaaaaaagaagcttc
acccctattaatgaaattctcaccactaccaacaatactttgattgatgttattggtgtt
gttgtcaatgtcggagagatttctgtaattcgtagaaaggatggctctactgtaaacaag
agaatagtaaaaataaatgatatgtcaactttgacaatagatgttaaccttggggcccgc
catcagaacaactag
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