Cryptomeria japonica (Japanese cedar): 131050257
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Entry
131050257 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131050257
03420 Nucleotide excision repair
131050257
03430 Mismatch repair
131050257
03440 Homologous recombination
131050257
03460 Fanconi anemia pathway
131050257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131050257
03032 DNA replication proteins [BR:
cjf03032
]
131050257
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131050257
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131050257
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131050257
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131050257
MMR (mismatch excision repair)
131050257
DSBR (double strand breaks repair)
HR (homologous recombination)
131050257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep_fac-A_C
Motif
Other DBs
NCBI-GeneID:
131050257
NCBI-ProteinID:
XP_057840432
LinkDB
All DBs
Position
3:639337754..639339973
Genome browser
AA seq
391 aa
AA seq
DB search
MASSTATSELIEHSTIDNLAKTQEYVPTPFAIQSINAGDDLPLALLQGCEIRITCFDHIA
QLHSNRVDIGSHYLISKGSIKEANARYKKLNSHLEITLSNASILTLCTNEEQEDQQCPLF
TPINELFHLSNNTLVDIIGLVLYVGDIIPIHRKDGNETHKRVVKINDLSDSTIDINLWGP
MVEQKGLQLKDMLSNDSVVILALRNAHVGYFNGKLINIIAATTLHINPTFPEAEPLTLRG
KDPLLVVPFVKETIHIDGRYTRMTISSIREQMSVKPETIQTTLLAVLHFVNLQDATGTLW
ATTFDEGSIHLLHKNAKQLCALQNDATTTETPCSMIKRLLSRHYSFTLLVSTETYNSESK
MKVTVNKVSPVDFKAESHALLVEIDRLSTQP
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcaacagccacctctgaattgatagagcactccacaattgataatttggca
aaaacccaagagtatgtgcctaccccttttgcaattcaatctatcaatgctggggatgac
cttcctttagcattgcttcaaggttgtgaaattagaattacatgttttgatcatatagct
caattacactctaaccgtgtggacataggttcacattatcttatttcaaagggatccatt
aaggaggcaaatgcaaggtacaaaaaactaaatagtcatttagaaatcaccttgtctaat
gcatctatactgacactctgcaccaacgaagaacaagaagatcaacaatgtcctcttttc
acacccattaatgaattgtttcatctatcaaataacacgttggttgacataattggcctt
gttctatatgttggagatatcattccaatacacaggaaagatggcaatgaaacacacaaa
cgtgttgtgaaaattaatgatctatctgattcaacaattgacatcaacctatggggtcca
atggtagaacaaaaaggcctacaattgaaagatatgttgagtaatgatagtgtcgttatc
cttgctttgcgtaatgctcatgttggctatttcaatggcaagcttataaacattatagct
gcaaccacattacatatcaacccaacttttccagaagcagagcctctaacattaagagga
aaggaccctttacttgttgtaccctttgttaaagaaactatccacatagatggcagatat
actagaatgactatttcttcaattcgtgagcaaatgagtgtcaagccagaaacaattcag
acgactttgctagctgttctgcactttgtaaacttacaagatgccacaggtactctatgg
gccactacatttgatgagggtagcattcatttgctacacaaaaatgcaaaacaactttgt
gcactacaaaatgatgcaacaacaacagagacaccttgctcaatgattaagagactactg
tcacgtcactattccttcacactgctagtttccactgagacatataattcagaatcaaag
atgaaagtcacagtcaataaagtctctcctgttgatttcaaagctgagtctcatgcacta
cttgtagaaattgaccgcctaagtacacagccttag
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