Cryptomeria japonica (Japanese cedar): 131050727
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Entry
131050727 CDS
T10556
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
Spliceosome [BR:
cjf03041
]
Complex A
U1 snRNP components
U1 related factors
131050727
Complex B
131050727
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NCBI-GeneID:
131050727
NCBI-ProteinID:
XP_057840946
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Position
11:complement(9935415..9979822)
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AA seq
1140 aa
AA seq
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MAAIPPPQQQQAQQQQQQQGEPQMAPWMNGPNALATPSVSGHPSGPQAHMAGNPSSSGPL
PPRPPGMISSGPQNFGPPMPVQQFRPGVAPQSNQQFMNPGSQQFRPVAQGMPPPNMSVQP
QPVQYPPQMQHMPPRPGQQHQVPPSSQAPPMSYLQQPRPMVTGPSQSQQSQQSSQPVNMP
PPPGLGGMGMPPSSSYTFATSSPYGQPPNSFNANPAYQPVSQPQHMPMVNPGTQQWGSAG
QNSAVPQAVQTNQQAISASGAPGQPLNSNSQSSSEWQEHTAGDGRRYYYNKRTRQSSWEK
PLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPDDLRIAREQAEKAANPVT
NSEGSLSMAPSPVPVAVVSSPAKASPNMSVASVTVTPTVLAPTGPSTVSASVMPLMPTNP
ATLMPSVIPTVPTLIGAVSPALAASVPTATPAAVIMPTITVASASITSPPPSVPSNTVVP
VTTALAASTAVPVVTVETTTATIDTTMSNIGDSKEGGTDETSAQDQEEAKKATAVTGKVN
VTPLSEEKAVDEEPLTYANKTEAKNAFKELLESAHVESDWTWEQAMRIIINDKRYGALKT
LGERKQAFNEYLAQRKKHEAEERRIRQKRAREDFIIMLEESKELTSATRWSKAVTIFESD
ARFHAVDRGRDREELFEGYLLELERKEREKAREERKKNIIEYRAFLESCDFIKANTQWRK
VQDRLEDDERCSRLDKIDRLEIFQEYIRDLEKEEEEERKIQKEQLRRKERKNRDEFRRLM
EDHKASGLLAAKTHWRDYCAKVKDHPAYLAVASNTSGSTPKDLFEDVAEEMEKQYQEDKA
NIKDALKAGKFTVTSTWTLDKFKASIGEVYDLAAASETNLKLVFEEVLERTREKEEKEAK
KRQRLADDFTDLLYSVKEIVASSKWEDCIPLLEDAQEYRAISDESFRRELFDEYVAHLQE
KVKEKERKRDEEKAKKEKEKEEKEKEREKRKEKEREKREEKEREKREKDKERDREKGKDR
SRKDRDSASDIVDVVSSHAQKEERKKDKEREKEKDRKHKKRHASTTEDVSSGKEEREESK
KSRKHTSDRKKSSRKHGYESGSDSETRHKRHRRDRDGSRKNGALEELEDGEVGEDGEIRA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggcagctattccccctccacagcagcaacaggctcagcagcaacaacagcagcaaggt
gaaccacagatggcaccttggatgaacgggccaaacgcattagctactccatcagtctct
gggcatccttctggtcctcaagctcacatggcagggaacccttcatcatctggaccactg
ccacctcgaccccctggtatgatatcttcagggcctcagaactttggacctccgatgcca
gtgcaacagtttagaccaggagtagctccacagtcgaaccagcaatttatgaatccaggt
agccaacagtttcggcctgtagcacaaggcatgccaccaccaaacatgtctgtccaacca
cagcctgttcaatatcctccacagatgcagcatatgcctccacgcccagggcagcaacat
caggtgccaccgtcatcacaggctccacctatgtcatatcttcagcaaccaaggccaatg
gtaactgggccttctcagtcccagcaatctcagcaatcatctcagcctgtgaatatgcca
cctccaccaggtttggggggcatgggaatgccaccatcatcatcctatacgtttgctaca
tcctctccgtatggacaaccgccaaattcattcaatgctaatccagcctatcaacctgtt
tctcaaccgcaacatatgccaatggtgaatcctggaactcagcaatggggatctgcaggt
caaaatagtgctgtgccacaagcagtacaaacaaaccaacaggcaatttctgcttctggg
gctcctggacaacctttgaattctaattcacaaagttcttctgagtggcaagaacatact
gctggagatggaaggagatactattacaataaacggacaaggcagtctagttgggagaaa
cctttagaattgatgacaccaattgagcgggcagatgcatccactgtctggaaagaattc
acgaccccagaaggaagaaagtattattacaataaggttacaaaacagtccaagtggaca
attccagatgatctaaggattgctcgagagcaggcagagaaagcggcaaatccagtcaca
aactctgaaggatcattatctatggctccgtcacctgttccggttgcagtagtttcttct
ccagcaaaagcatctccaaatatgtctgttgccagcgtcactgttactcccacggtttta
gctccaacagggccttcaactgtttctgcatcagttatgcctcttatgccaacaaatcca
gctactttaatgccttctgtcattcccactgttcccaccttgattggagctgtctcacct
gctttggctgcatctgttcctacagctactccggcagctgttatcatgccaacaatcacc
gtggcttcagcatccattaccagtccacctccttcagttccatcaaatactgttgttcct
gtaactacagcactggctgcatctactgcagtgcctgtcgtcactgtggaaactaccact
gctacaattgacacaacaatgtcaaatattggtgattcaaaggaaggaggaacggatgag
acttctgcacaggatcaggaggaggctaaaaaggcgacggcagtaaccggaaaggttaat
gtaactcctttatcagaagaaaaagctgttgatgaggagcctttgacttatgcaaacaaa
acagaggcaaagaatgcttttaaggaacttcttgagtctgcccatgttgaatctgattgg
acgtgggagcaggctatgcggataatcatcaatgataagcgatatggagctctcaaaacc
cttggggagcgaaaacaagcgttcaatgaatatttggcccagcgtaagaagcatgaggct
gaagaacgacgtatacggcaaaaaagagctcgggaagattttatcattatgttggaggag
agtaaggaactgacatcggcaacacgatggagcaaggctgtcactatatttgagagtgat
gcaaggtttcatgcagtagaccgaggaagagatagagaggagctctttgagggctatcta
cttgagttggagagaaaggaacgggagaaggcacgtgaggagcgaaaaaagaatattatt
gagtatagggcctttttggagtcttgcgatttcataaaggcaaatactcaatggagaaaa
gttcaagataggctggaggatgatgagagatgctcaagactggataaaattgaccggttg
gagattttccaggagtatatacgtgatttggagaaggaagaagaagaagaacgaaagatt
caaaaggaacaattgcgtcgaaaggaacgtaaaaatcgggatgaatttcgaaggttaatg
gaggaccataaggccagtggcctgcttgcagcaaagacacactggcgtgattactgtgcc
aaggtcaaggaccatcctgcttatctagctgtggcctcaaacacatctggttcgacgccc
aaggatttgtttgaagatgttgcagaagagatggaaaagcagtaccaggaggacaaagca
aatataaaagatgctttgaaggcaggaaagttcacagtaacatcaacatggactcttgac
aagttcaaagcctccattggtgaagtatatgatttggctgctgcatcggaaacaaatctc
aagcttgtgtttgaagaagtgcttgaacggacaagggaaaaggaagagaaagaagcaaaa
aagaggcaaaggctggcagacgatttcacagatttgctttattctgtgaaggaaatcgtt
gcttcctcaaaatgggaggattgcatacctttgcttgaagatgcccaagagtacagggca
attagtgatgaaagcttccgtcgggagttatttgatgagtatgttgcacaccttcaagaa
aaggttaaggaaaaggaacgcaaacgagatgaagaaaaggcaaaaaaagagaaagagaag
gaggagaaagaaaaggagagggagaaaagaaaggaaaaagagagggaaaagagagaggaa
aaagaacgggaaaaaagagagaaggataaagaacgcgaccgtgagaagggcaaggatagg
tctagaaaggacagagattctgcaagtgatattgttgatgtggtaagcagtcatgcacag
aaggaggagcggaaaaaggacaaagaaagagaaaaggaaaaggacaggaaacataagaaa
cgccatgcaagtactactgaggatgtcagctctggaaaagaagagagagaagagtccaaa
aaatctcgtaagcacactagtgacagaaagaagtcttctcgaaagcatggatacgaatct
ggatcagatagtgaaactaggcataagcgtcatcggagagatcgggatggatcacgtaag
aatggtgcattagaggagcttgaggatggagaagtcggagaggatggtgaaattcgtgcc
tga
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