Cryptomeria japonica (Japanese cedar): 131050786
Help
Entry
131050786 CDS
T10556
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020
RNA polymerase
cjf03420
Nucleotide excision repair
Brite
Enzymes [BR:
cjf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131050786
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131050786
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131050786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131050786
NCBI-ProteinID:
XP_057841030
LinkDB
All DBs
Position
10:361767897..361785033
Genome browser
AA seq
1846 aa
AA seq
DB search
MDTRFPYSPAEVAKVKVVQFGIISPDEIRQMSVAQIEYSETYERGKPKLGGLSDPRLGTI
DRKLKCETCSAGMAECPGHFGHLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHR
FKQALKVKNPKHRLRKVLDCCKNKVKCEGGDVIDEDQGQDGDDEVKKKRQGGCGAQQPKI
CIDGMKIMAEYKAPRKKADDPEQLMPEPVERKQQLTAERVLSVLKRITDEECQMLGLNPK
YARPDWMILQVLPVPPPPVRPSVMMDTTSRSEDDLTHQLAMIIRHNENLKKQEKTGAPAH
IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
IIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMP
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPK
QINLIRYSAWHAESETGFITPGDTCVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGP
DAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEVINETISKAKNEVKQLIKAAQD
KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
QMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMG
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
SQKLDSLKMKKKEFENVYKYEIDQENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESD
RRQLGTEIAPSGDNSWPMPVNLKRLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLK
VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSLV
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
YLKPEVNKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYYEMPD
EDIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
RIMNEEAPKGEAQDQNSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG
FKPETEWMLDTEGVNMLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRKSLLDELRVVIS
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE
ADPLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMVDFGMTPSRSPI
TGTPHHDAMMSPSYLLSPSLRSSPITEAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPG
YSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY
SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSFNPAS
TKYSPTSPAYSPSSPRYSPSSPYSPTSPNYSPNSPSYSPTSPSFSQASPTYSPTSPPYSP
ASPGFSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQFSNKDEGSTR
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgattcccgtactccccggctgaagtggccaaggtgaaagtcgtgcagttc
ggcattatcagcccggatgaaatcaggcaaatgtctgttgcacaaattgagtacagtgaa
acttatgagcgtgggaagcctaagctcgggggactgagtgatccacgtttgggtaccatt
gatagaaaactgaagtgcgaaacttgttctgctggcatggctgaatgccctgggcatttt
ggacaccttgaactcgccaagcccatgtatcatattgggtttttgaagaccattctttcg
attttgcgttgtgtatgcttcaactgctcaaggattcttgcagacgaggatgatcatcgt
ttcaaacaagcattgaaagtaaagaacccaaaacacaggctcagaaaggttttggattgt
tgcaagaataaagttaaatgtgaaggtggagatgtcattgatgaggatcaaggtcaagat
ggagatgacgaggttaagaagaagcgacaaggaggttgtggtgcccagcagcccaagatc
tgcattgatggaatgaaaataatggctgaatataaagctccacgcaagaaagcagatgac
ccagagcagttgatgccggagcctgttgagagaaaacaacagttaactgctgagagggtt
ttgagtgttttgaagcgaattactgatgaggagtgtcaaatgttgggattgaacccaaaa
tatgctcgcccagactggatgattttacaagtgcttccagttcctccacccccagtcaga
ccttcagttatgatggacaccacaagtaggagtgaggatgatctcactcatcagcttgca
atgattatcagacacaacgaaaatctaaaaaagcaggagaaaactggggctccagctcat
attatttctgagtttgcccaattgttgcaattccacattgctacttattttgacaatgag
ctgcctggtcagccaagggcaacccagaggtcaggacgaccgataaaatcaatatgcagt
cgattgaaagctaaagagggtcgcatcaggggaaatctgatggggaagcgtgtagatttt
tctgcacgtacagttattacacctgatcctaacattaacattgatgaattaggagtcccc
tggagtattgcactgaacctcacatacccagagaccgtcactccatacaacatagaaaga
ttaaaggaacttgttgaatatggacctcatcctccaccagggaaaactggtgccaaatac
attatcagggaggatggccagagacttgatctccgttacttgaaaaagagtagtgatcac
catctagagttgggctataaggtggagaggcacttgaatgatggagactttgttcttttt
aatcgacaaccaagtcttcataagatgtctatcatgggtcatagaatcagaatcatgcct
tactcgactttccgattaaacttgtcagtcacatcaccctacaatgctgattttgacgga
gatgaaatgaacatgcatgttccccagtcatttgagacaagagcagaagttttggaacta
atgatggtgccaaaatgcattgtttctcctcagtccaataggccagttatgggtatcgtg
caagatacacttttgggttgtcgaaagattacaaaacgagacacctttatagaaaaggat
gtctttatgaatatcctaatgtggtgggaggattttgatgggaaaatacctgctccaact
attctaaagccaaggccgctttggactggaaaacaagtcttcaatctgatcattccaaaa
caaatcaatcttataaggtattctgcatggcatgctgaatctgaaacaggatttattaca
ccaggagatacatgtgtacgcattgagaaaggggaggttatttctggcactctttgcaag
aaaacccttgggacttcctcgggaagtctaatacatgtcatctgggaggaagtaggccca
gatgctgctcgtaagtttttaggtcacacacagtggcttgtaaactactggctgctacaa
cagggtttcagtattggtataggagacacaattgctgatgctgcaaccatggaagttatc
aatgaaacaatttcaaaagcaaagaatgaagtcaaacaacttattaaggctgctcaggat
aagcaattggaggcagaacctggtcgaacaatgatggagtcttttgaaaacagagtcaat
caggtgttaaataaggctcgtgatgatgcaggaagcagtgcacaaaaaagtttatccgag
agtaacaatttgaaggctatggttactgctgggtcaaaaggaagttttatcaacatatct
caaatgactgcttgtgtgggacagcaaaatgtagaagggaagcgaattccatatggattt
gatggaagaaccctaccacattttacaaaggatgataaaggtccagaaagtcgaggcttt
gtggagaattcctatctgcgtggtttgactcctcaggagttcttttttcatgcaatggga
ggacgtgagggtttgatagatactgcagtgaaaacgtcagaaacaggatacatacagcgt
cgtcttgtgaaagctatggaagacatcatggtgaaatatgatgggactgtcaggaattca
cttggcgatgtcatccagttcctgtatggtgaggatggtatggatgctgtttggattgag
tcacagaaacttgattctttgaagatgaaaaagaaagagttcgaaaatgtttataaatat
gaaattgatcaagaaaactggaatcctagctacatgttaccagaacatgtagatgatctg
aaaaccatcagggagttccaaaatgtttttgatgcagaattgcagaaactagagtcagat
agacgacagttaggcacagagattgctcccagtggtgataactcatggcctatgcccgta
aatctgaagaggctcatttggaatgcccagaagactttcaaaattgatccaaggaaacga
tcagatatgcatcctatggagattgtagaagccattgacaagcttcaggaaaggctaaag
gttgttcctggtgatgatctcatgagtattgaggcccagaaaaatgcgactcttttcttc
aatattctactgcgcagtacatttgcaagtaaacgtgtactgaaggagtaccaccttaca
aaggaagcatttgaatgggtagttggtgagattgaatctcgtttccttcagtctttagta
gctccaggggagatgattggatgtgttgcagcacagtcaattggtgaaccagctactcag
atgacattgaatactttccattatgctggtgttagtgccaaaaatgttactctcggcgtt
cctcggctaagagaaattataaatgtggcaaagaaaattaaaacaccatcactttcagtg
tatctaaagccagaggtcaacaagacaaaagaaagagcaaagaatgtccaatgtgcttta
gagtacacaaccttgcgaagtgttacagaggctactgaagtgtggtatgatccagatcca
atgagcactatcatagaggaggatgttgactttgttaaatcatactatgaaatgccagat
gaggatattgcacctgaaaaaatatctccatggctgctgcgtattgaattaaatagggag
atgatggttgataaaaagctcagtatggcagacattgcagaaaaaatcaaccttgagttt
gatgatgatttgacatgcattttcaatgatgataatgcagaaaaacttattctgcgtata
cgtattatgaatgaagaggctcctaaaggggaagctcaagatcaaaactctgaagatgac
gtctttctaaagaagattgagagtaacatgcttacagaaatggctctacgaggcattcct
gatattaataaagtgtttataaaatctggaaaaattaacaagtttgatgagaatgaagga
ttcaaacctgaaacagaatggatgttggatacagaaggggtcaacatgttagctgttatg
tgccatgaagatgttgatgctacaaggacaacgagtaatcacttgattgaagttattgag
gtgcttggaattgaggctgtgaggaaatcacttctagatgagcttcgtgttgtgatatct
tttgatgggtcatatgtgaattacaggcatttagccattttgtgtgacacaatgacatat
cggggccatctaatggccattactagacatggtatcaatcgtaatgatacagggccaatg
atgcgatgttcatttgaggaaacagttgatattcttttggatgctgctgtttttgctgag
gcagatcctctgaggggtgttacagagaacatcatgcttggccagttggctccgattggt
acaggtgattgtgccttgtatttgaatgaccagatgctacaacaagcaattgaactccaa
ctacccagctatatggaaggaatggtagactttggaatgacaccatctcggtccccaata
acaggaacaccacaccatgatgcaatgatgtcaccaagctatttgctcagcccaagtctc
cgcagctcaccaattacagaggcccaattttctccctatgttggtgggatggccttctct
ccatcttcatctcctggctacagcccttcatccccaggttatagcccctcatctcctggg
tatagtccgacttcacctggatatagccccacatctccagggtacagtccaacatcccct
ggatatagtcctacatcaccatcatacagtccaagttctcctggatacagtcctacgtct
ccagcatattcccccacaagcccatcttattctccaacttcaccaagctacagtcccaca
tcaccaagctacagtcccacttctcccagttatagccccacatccccgagctatagtccc
acttctcccagttatagccccacatcccctgcatacagccccacttcaccagcatatagc
cccacttctccagcatatagcccaacatcaccttcatacagcccgacgtcgccttcatat
agccccacatctcctgcatacagccccacatcacctgcgtacagccccacatctccagca
tatagtcctacatcgcctagttacagtccgacatcaccgagttacagtccaacatctcct
gggtacagtcccacttcgccaagttatagtccaacatcaccaagttttaatccagcctct
acaaagtacagtccgacttcaccggcatattccccaagcagtccaagatattcaccatca
agtccatatagtccaacatcgccaaattacagtcctaattcaccatcttattcaccaaca
tctccttcattttctcaagcgagtcctacttacagtcctacaagtcctccatattcacct
gcaagtccgggattcagtccaagttcaccacaatacagtcccagtgctggttattctcca
actgctcctggctattctccgtcttccacaagccagtatacaccacagttcagcaacaaa
gatgaggggagtactcggtga
DBGET
integrated database retrieval system
