Cryptomeria japonica (Japanese cedar): 131050974
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Entry
131050974 CDS
T10556
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131050974
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131050974
Translation factors [BR:
cjf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131050974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131050974
NCBI-ProteinID:
XP_057841279
LinkDB
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Position
6:474632875..474703395
Genome browser
AA seq
1194 aa
AA seq
DB search
MTYTAIVRRFVKPGLTMLSRPPVLQNAGKNCCPALLLAGNSAKSSRLGSLRIVRSRHFVA
LGNNGSSSWKKRTRAIVCFQGLLPFTAQSKDISYRIATEQFSDDEYEPVETTNAKVSSSA
ANIDEWKWKLSMLIRNKEEQEIVSKDKKDRRDYEQIAAIATRMGLYIQQYTKLVVVSKVP
LPNYRPDLDEMRPQREVVIPLGLQKRVENLLRQHLVRKQNNPYLFPDAHKGRTKDSLICN
EDGLLEQDAFKMPRKTVHESILRHRSIEIRNKQRAWQETPEGQEMLEFRRSLPSYKEKDA
LLEAVERNQVVVVSGETGCGKTTQLPQYILETEIESGRGAMCSIICTQPRRISAMSVSER
VAAERGETLGESVGYKVRLEGMKGRNTRLLFCTTGILLRRLLLDAELDGVSHVVIDEIHE
RGMNEDFLLIVLKGLLPRRPDLKLILMSATLNAELFSTYFGGAPTIHIPGFTHPVREYYL
ENIVEKIGYKLTQSNQLDDYGQDQAWKMQRQALRKRKTQLAALVEDAVANANFDQHSSTT
RNSLACWNPDCIGFNLIEAVLCHICRNERAGAVLVFMTGWDDINSLKNQLISHPLLGDPT
RVLLLACHGSMASSEQKLIFEKPPHDIRKIVLATNMAETSITINDVVFVVDCGKAKETSY
DALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPGCVYDALEEYQLPELLRTPLQ
SLCLQIKSLQLGSIVEFLSRALQPPEPLSVQNAVEYLKTIGALDDKENLTILGRHLSMLP
VEPKLGKMIIMGTLLHCLDPILTVAAGLSVRDPFLLPHDKKELADAAKAKFSATSDHMAL
VHAYEGWKDAQRDGSVYDYCWRNFLSTQTLQAIHSLRKQFHFLLKEANLLDGDADVLNEL
RDNQALVEAVICAGLFPGVVSVVNKKKCISMKTMLDGQVLLCANSVNAQKENIPCPWMVF
FEKFKVNSVFIRDSTGISDSVLLLFGGALTRGEVDGHLKMLDGYLEFFMEPDLAEIYLKL
KDELDDLIQKKLQNPSMDIHKVGDHLLQAVRELLSADRCEGRFVFGCEVRESQVQKTKVK
KSKDMNVNDASSSQNPKSLLQTLVSRAGYGQPRYKTKHMNDNQFRAMVEFNGMQFVGRPC
YKKRSAEQEAAMEALAWLTGASRSLPAGKNNKAMPLKKTKKKEHELVKSAASRW
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacatatacagctatagttcgaaggtttgtaaagccagggcttacaatgctctcgagg
ccaccagtcttgcagaatgctggtaaaaattgttgccccgccttgcttttggctggtaat
tctgcaaaatccagcaggttagggagcttgagaattgtcaggagtagacattttgttgca
ttggggaataacggttcctcgagttggaagaagagaacaagggcaattgtttgttttcag
ggattattgccatttactgcacagagcaaagacatcagttatagaattgcgaccgaacag
ttttcggatgatgagtacgagccagtggagactactaacgcaaaggtttcttcctctgct
gccaatattgatgaatggaaatggaagcttagcatgcttattcgcaacaaggaagagcag
gaaatagtctcaaaggataaaaaagacagacgggactatgagcaaatagcagcaattgcc
actagaatgggtttatacatccagcaatatacaaaacttgtggtggtgagcaaggtccca
ttgcccaactacagaccggatttagacgaaatgcgtccacagcgggaggttgtcattcct
cttggactgcaaaaacgagttgagaatcttcttcgacaacatcttgttagaaaacagaac
aatccatacctgtttcctgatgctcataaaggcaggacaaaggacagcctgatttgtaat
gaagatgggcttttggagcaagatgcatttaaaatgcctagaaagactgtccatgaaagc
attcttaggcacaggagtattgaaattcggaataaacagcgagcctggcaggaaacgcct
gaaggccaggagatgctagaattccgaagaagccttccttcttacaaggaaaaagatgca
ttgctggaagctgttgaaagaaatcaggtagtagttgtatcaggtgagactggctgtggt
aaaacaacacagcttcctcagtacattttggaaactgaaatagagtctggccgtggggca
atgtgtagcatcatctgtacacaacctagacgcatatctgccatgtctgtttctgaaaga
gttgctgcggagagaggcgaaacactgggtgaatcggtaggttacaaggttcgcttagag
ggcatgaaggggaggaatacacgcttgcttttttgtacaactggtattttgttgagaaga
ttgcttctcgatgctgaattagatggtgtaagtcatgtagttattgatgaaatacatgag
cgtggcatgaatgaagattttcttctgattgtattaaagggccttctccctcggcgacca
gacctcaagttaatattgatgagtgcaacccttaatgcagaactgttttcaacttacttt
ggtggagcacctacaatccatataccaggttttacacatccagtgagagagtattatctg
gaaaatatagtagagaagataggttataaacttacacaatctaaccaattggatgattat
ggacaagaccaagcatggaaaatgcagagacaagcacttcggaagcggaagactcagctt
gctgcccttgttgaggatgctgttgcaaatgctaactttgaccagcatagttccactaca
cgcaattctttggcttgttggaatcctgattgcataggcttcaatctcatagaagcggtc
ttatgtcatatttgtagaaatgaaagagcaggtgccgtattggtgtttatgacaggatgg
gatgatattaattctttaaagaaccaactcatttcacatcctcttctaggagatccaacc
agggttctgctgcttgcatgccatggatcaatggctagttcagagcagaaattaattttt
gaaaagccgccccatgatatccgaaaaatagtacttgcgacaaacatggcagagacaagc
attaccatcaatgatgttgtttttgtcgttgactgtgggaaagccaaagaaacttcttat
gatgcgttgaacaatactccttgcctacttccttcttggatatcaaaagcttctgcccgg
caaaggagaggccgagctggtcgtgttcaaccaggtgaatgctatcatctttatccagga
tgtgtatatgatgctttagaagagtatcagttacctgagcttctgagaacacctttacaa
tctctttgtttgcaaattaaaagcttgcagcttggaagcattgtagaattcttgtcaaga
gctttacagccaccggagcctctttcggttcaaaatgcagttgaatatttgaagactatt
ggagctcttgatgacaaggaaaacttaactattcttggacgccacttatcaatgcttcct
gtggagcctaagttgggtaagatgattatcatgggtacacttctccattgcttggatccc
atccttacagttgcagctggtttgagtgttagggatcctttcttgctacctcatgacaaa
aaggaacttgcagatgcagcaaaagcaaagttttctgcaactagtgatcatatggccctt
gtccatgcatatgagggctggaaagatgcacaaagagatggatcggtttatgattattgc
tggagaaattttctgtcaacacaaactttgcaagccatacattctttgcgcaaacagttc
cactttctgctaaaggaggccaatttgttggatggtgatgctgatgtcttaaatgagctg
agggataatcaagctttggtggaggcagttatatgtgctggtctttttcctggggtagtt
tctgttgtgaataagaaaaaatgtatttctatgaagactatgctagatggtcaggttctg
ctttgtgctaattcggtgaatgcgcaaaaggaaaatattccctgcccctggatggtgttc
tttgagaaatttaaagtcaattcagtatttattcgtgattcaacaggaatctcagattct
gtcttactgctttttggaggtgcacttactcgtggagaagtagatggtcatttgaaaatg
ttagatggatacttggagttctttatggaacctgatttagcagagatctatttgaagctc
aaagatgagcttgatgacctgattcaaaagaagcttcaaaaccctagtatggatattcac
aaagttggtgatcatctattgcaagctgttcgagagctcttgtctgcagatagatgtgaa
gggaggtttgtgtttggctgtgaagtccgtgagtcccaagtccagaaaaccaaagtcaag
aaatctaaagacatgaatgttaatgatgcaagttccagtcaaaatcccaaaagtttatta
caaacactggtgtcaagagcaggatatggtcaacctcgatataagacaaagcatatgaac
gataatcaatttagagcaatggtggaatttaatgggatgcagtttgtgggaagaccatgt
tacaagaaaaggtctgcagagcaagaagctgcaatggaagcattagcatggctaactggt
gcatcacgttcattgcctgccgggaaaaataataaggcaatgccacttaagaaaacgaag
aaaaaggagcatgaactggtaaaaagtgctgcttctcgttggtag
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