KEGG T10556: 131051128

Cryptomeria japonica (Japanese cedar): 131051128

Entry

131051128         CDS       T10556

Name

(RefSeq) sm-like protein LSM4 isoform X1

K12623

U6 snRNA-associated Sm-like protein LSm4

Organism

cjf Cryptomeria japonica (Japanese cedar)

Pathway

cjf03018

RNA degradation

cjf03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:cjf00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131051128
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131051128
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjf03019]
    131051128
   03041 Spliceosome [BR:cjf03041]
    131051128
Messenger RNA biogenesis [BR:cjf03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131051128
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     131051128
Spliceosome [BR:cjf03041]
Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    131051128

SSDB

Motif

Pfam:

LSM SM-ATX

Other DBs

NCBI-GeneID:

131051128

NCBI-ProteinID:

XP_057841485

LinkDB

Position

3:684178594..684208619

AA seq 240 aa
MGKIHLGIFARVERYSKDQRASPTDEECWFTKNSPRIDFLEKQKKTRLISQTVYRSVPGF
KLKETDYLRPMTGKESIKRQHFKKLLPKKIVFQKLPLSLLKTAQGHPMLVELKNGETYNG
HLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETIRRI
DRKPVIANRGRGRGRNEEGGGRGPTKTGGRGAPEEGGGRGGRARGGGRGGTGRGGARGRT

NT seq 723 nt +upstreamnt +downstreamnt
atgggaaaaatacatttgggaatttttgctagagtggaaagatatagcaaagaccaaagg
gcaagtcctaccgatgaagaatgctggtttacaaaaaactcgccaaggattgatttcctg
gagaaacaaaaaaaaacgaggctaatttcacagactgtttatcgctcagtacctggcttt
aagttaaaggaaactgattatttacgccctatgacaggcaaggagtcaattaagcgtcaa
cactttaagaaattacttcctaaaaaaatagtcttccaaaagcttcctttgtcattgctc
aagacagctcaaggccatcctatgttggtggagttgaagaatggggaaacatacaatgga
catttagtgaactgtgacacatggatgaacatacatctaagagaagtcatatgtacatct
aaggatggtgatcgtttttggcgaatgcctgagtgttacatccgtgggaacactatcaaa
tatctacgagtacctgatgaggttattgacaaagttcaagaagaaacgattagacgtata
gatagaaaacctgttattgctaatcggggaagaggaagaggaagaaatgaggaaggtggt
ggtcgaggaccaacaaaaactggaggtcgaggagccccagaagaagggggaggtaggggt
ggacgtgctagaggaggtggaaggggaggaactggaagagggggtgcccgtggccgtacg
tga

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