Cryptomeria japonica (Japanese cedar): 131052605
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Entry
131052605 CDS
T10556
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03430
Mismatch repair
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131052605
03460 Fanconi anemia pathway
131052605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131052605
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
131052605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
131052605
NCBI-ProteinID:
XP_057843176
LinkDB
All DBs
Position
10:96300008..96549105
Genome browser
AA seq
964 aa
AA seq
DB search
MMDGIRPINKADVHRICSGQVILDLSSAVKELVENSLDAGANSIEVRLKEYGGESFEVGD
NGCGISPNNYQSATLKYHTSKISDFSDLQSLTLLGFRGEALSSLCALGNVTIETRTKNES
VGTQLIFDHSGLIISQKNIARQIGTTVSVAKLFSPLPVRYKEFHRNIRREYSRLLSLLHA
YALIAKGVRLVCSNVSGRNPKIVVLRTQGSGSVKDNIITVFGTKTLACLTALDFCMSDGC
YIEGFVSKPGSGSGRASGDRQFFYVNGRPVDMPKVTKLLNELYKSYNSQQYPMAVLNFIL
PTTTYDVNVTPDKRKIFLHDEGSIMSALRESLEKIYSPNKYTYSINNVEISSQVMETVIS
SVSPCNSDKQEPSFPDNYDVIENGNSKVLVLDDSRLNSHTEDLFQEPKEAVIQEDNSENQ
KVDDALTEPISDTCEPKTSTPLVDFTAFKCGTPSELTKVTHSSLSELESSSMSSLAKTAK
GGLKDLGLVSHSRRVQSKLTGFVTPNKRQHEKGSLLSEEPVLKKWMFCADENSKCIKKQN
IKGSRLGFCLERGDSSIHNLTSKTEDENDCPAIQDLSENLTPVQCCNEQAKYQRGSPQVE
GDHGTDEENAECENLEMISREDDVGMISSSTQIWDVERVSRTDEDIGTKLMSDVQLDDKD
NIDRQADSKDIRIVQFDINRCRLKSSRGFLRHDRNVDSQEKQKRHKKRCYAAATLAKSSI
VEDGEEKEVALAAATRELERSFNKEDFRKMKVIGQFNLGFIIGKIDEDLFIIDQHASDEK
YNFEHLSRTTILNCQPLLRPLALELTAVEEVTISTHMDIFRRNGFDFAEDASAPPGRRFL
LTSVPYSRNITFGVGDVQELISILVDEPAPFSAEYNDSVKCSYPSDYSCKKVISRCVSAI
CPSRVRAMLASRACRKSVMIGDALSKKDMEMILQHLSTLDSPWNCPHGRPTMRHLFDLAT
LNQT
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgatggatggaatcagacctattaataaagcagatgtccacagaatttgttctggacag
gttattctagatctctcaagtgctgttaaggaacttgtagaaaatagcttggatgcaggc
gcaaacagtattgaggttcggctgaaagagtatggaggagaatcatttgaggttggagat
aatggatgtggtatttccccaaacaattaccagagtgcaacactcaagtatcacacttcc
aagatttcagatttttctgaccttcaatcattgactcttttgggattccgtggagaggca
ttaagctcactctgtgctttggggaatgtgaccatcgaaacaagaactaagaacgaatct
gttggtacacaattaatatttgatcattcaggtctgattatttctcaaaaaaatatagca
cgccagattggtaccacagtttcagttgcaaaattgttttcccctttgcctgtgaggtat
aaggagttccatcgcaatatacggcgagagtatagccgccttttgtctctattgcatgcg
tatgctctcattgcaaaaggagttcgattagtttgcagtaatgtgtcaggccggaatccc
aagattgtggttctgagaacacaaggaagtggttctgtcaaggacaatataataacagtc
tttggcaccaagacacttgcgtgcttgacagccttggatttttgtatgtcagatggatgc
tatattgaaggatttgtatctaagcctggatctggaagtggaagggcttcaggtgatagg
caattcttctatgtcaatggtcgtcctgtggacatgcctaaagtgacaaagcttctaaat
gagctttataaatcttataattctcagcaatatcccatggctgtcttgaatttcatcctt
cctactacaacatatgatgttaatgtaactcctgacaagaggaagatttttcttcatgat
gaaggttctattatgtctgctctcagagagtcgttagaaaagatttattctcctaataaa
tatacttattctataaataatgttgaaatcagctcacaggtgatggagactgtcatttca
tcggtgtcaccttgtaattcggataagcaggaaccctctttcccagataattatgatgtg
attgaaaatggaaatagtaaagttttggttttggatgacagtaggctgaattctcatact
gaagatctgtttcaagaacccaaagaagctgtgattcaggaggacaattctgagaatcaa
aaagttgacgatgcattgactgaaccaatatctgatacatgcgaacctaaaacaagcaca
ccacttgttgatttcacagcattcaagtgtggtactccttctgaactcacaaaagtgacc
cattcttctttaagtgaattggaaagctcttcaatgtcttcattggcaaagacagcaaag
gggggattgaaagatttgggattggtttcccattcaaggcgggtgcagtcgaagctcact
ggctttgtaacaccaaataagaggcagcatgaaaaaggatctctactgagtgaagaacca
gtgctgaagaaatggatgttttgtgctgatgaaaattctaaatgcataaaaaaacaaaat
atcaaaggttctaggctgggcttttgtttagaaaggggtgattcttcaatacacaatttg
acctcaaaaactgaagatgaaaatgactgtccagcaatacaggatttgagtgaaaattta
actcctgttcaatgttgcaatgaacaagccaaataccaaagaggaagtccacaggttgaa
ggggatcatggcactgatgaggaaaatgctgaatgtgagaacctagaaatgatatctcga
gaagatgatgtgggtatgatatctagttcaacgcaaatatgggatgtagagagagtttca
agaactgatgaagacattggcactaagttgatgtccgatgtgcaactagatgataaagat
aatattgatagacaagctgatagcaaagatattagaattgtccaatttgatattaatagg
tgcaggctgaagagcagcaggggttttcttaggcatgatagaaatgtagactcacaggaa
aaacagaaaagacacaagaagaggtgctatgctgctgccacactggcaaaaagttctata
gttgaagatggggaggaaaaggaggtagctttagctgcagccacaagagagctagagaga
tcattcaataaagaagattttagaaaaatgaaggtgattgggcaattcaatcttggattt
ataataggaaagattgatgaagatctttttatcattgatcagcatgcatcagatgagaag
tacaattttgagcatctttcccggacaactattttgaattgtcaaccattgcttcgacca
ttggcccttgagctaactgctgttgaagaggtcacaatttcaacacacatggacattttt
agaaggaatggatttgattttgctgaggatgctagtgcaccacctggacgaaggttcctt
ttaacatctgttccttatagcaggaacatcacttttggtgttggagatgtgcaggagcta
atatctattcttgtcgatgagccagcaccatttagtgcagagtataatgattctgttaaa
tgctcttatccctctgattattcatgcaaaaaggtcatatcacgatgtgtatctgctatt
tgtccatcgagagtgcgagctatgttggcatctcgtgcttgtcgtaaatctgtgatgatt
ggtgatgcattgagcaagaaggacatggaaatgattctacaacatttatcaactctagat
tctccttggaattgcccacatggtcgaccaacgatgcgacatttatttgatttggcaaca
ctaaatcaaacctag
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