Cryptomeria japonica (Japanese cedar): 131052667
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Entry
131052667 CDS
T10556
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131052667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131052667
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131052667
mRNA cycle factors
Common to processing body (P body) and stress granule
131052667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
131052667
NCBI-ProteinID:
XP_057843221
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All DBs
Position
5:complement(836954067..836965502)
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AA seq
1122 aa
AA seq
DB search
MAIPMENSSSQSTQDMVQRRYKRVMDLEKKLRDSIQAKTPSDPNIWSQMRENYEAIILED
HDFAEAKEIEHALWHLHYKRIEEFRARMRSAVVAAGGNNTTQGGRSVARREQVNKIRSVF
KSFLSEATGFYHELNLKIKAKYGFPVDPFSQQREDYLGSTNDKTKSADLRKAQVSCHRCL
IYLGDLARYKELHGEGDPSGRDFKVAESYYIQAASLWPASGNPHHQLAILATYMGNELVA
VYRYFRSLAVEAPFSTARDNLILIFEKNRQHYSHVREAEVALIKQMPTKVAGRGRGRGRG
DTKFAVREEKQDPAIKKIQVNIAEVNKTFRIRFVRLNGILFTRTSLETFDEVYSSAISEF
EELITPGNNSEMGIGSDAWTSGSTFCGLVVLQLLSILIYTVHNVNAEAESSNLSYAEILQ
RSVLLQNAFTASFGFAGCIISRCLNVDDVFSCPFLPAILVFMEWLACRRDVALGNESVEE
KQAKARTLFWTKCVIFLNKLLDLEKVCQDSNGGRLENEAAFTSLNRYNEEEAGGVALWED
FELRGFLPLAPAQLALDFSKQHSLSGKKERNIRVQRILAAGKAVGNLLEGSGQGMSYDAD
MMIFHVAGSYPEYKKKKESEAIKPKITKSMNNLDNHVQVIGPETVKQDISYIEKPVISSS
VAMIVKSDSDREQEEEDEVIVFKPIVAEKHPESVALNPQQSSVTVSANSSFHDMTTAITP
RELQQKSNVVSSVEIPFHISQSSAALTGAMDVLSGAYSNPQEVSKLFGGSASTVDHWSTG
IGLSAPGIASSLGSWGMTGYGVPFGNNHTSLTSMVNVNNHTSLPSMVNVSQQSAQLINQS
NPLWYGDREAHVLEGIINLNLHQFAGNGSMFGSELPAGMNGKVEFAPANLSMLPSQDLHS
SIAHNSGISVGAVASGMSGNPLLCDPSLGTASTYSNQQKVSVELDVAKSEVLPRSEFGTL
TSSTTSVTSKASSIPTVSSTVISKKGPVSRPVRHFGPPPGFGPVPSRPLDSKVDSMQRGS
AASNISEKVIQKNEQPQLDDYSWLDGYTPLNKDGGRKDSLLPHSGYYSLPASDSLINAAT
TFPFPGRQVPNMKLCEEQQQLQYNRRSQEQSLWSEQYFGRDP
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggctattcctatggagaattcatcttctcaatcaacacaagatatggttcaacgtcga
tacaaaagggtgatggacttggaaaaaaagttgagggattcaattcaggcaaagactcct
tctgatcctaatatttggagtcagatgcgggagaactatgaagctataatacttgaagat
catgattttgcagaagcaaaggaaattgaacatgcactgtggcacttgcattataagcgt
attgaagagtttagagctcgaatgcggagtgctgttgttgcagctggtggtaataataca
actcagggaggtagaagtgttgcgaggagagaacaagttaataaaatccgatctgttttc
aaaagttttctttccgaggcaactggattctaccatgaattaaatctaaagatcaaagcc
aagtatggattcccagttgatcccttttctcaacaaagggaagattatttaggttctaca
aatgacaaaactaagtctgctgatttgaggaaagctcaggtttcttgtcatcggtgcctg
atatacttaggagatcttgctcgatataaggaattacatggagagggagatccttcaggg
cgggatttcaaagttgcagaaagctattatatacaggctgcttcactctggccagcaagt
gggaatccacaccatcagcttgctattttggcaacatatatggggaatgaattggtggca
gtctatcgctattttcgaagcttggcagttgaggcaccattttccacagcaagggataat
ttgattctgatatttgagaagaatcgtcagcattactctcatgtacgtgaagctgaagta
gccctcattaagcagatgcctacaaaagttgctggaagaggaaggggtagaggaagaggg
gatacaaaatttgctgtaagagaagagaaacaagaccccgctataaagaaaattcaagtg
aacattgcagaggttaacaagacctttcgcattcggtttgtccgccttaatgggatcctt
ttcacacgcacaagcttggagacattcgatgaagtttattcttcagctataagtgaattt
gaggaacttattacacctggaaataattcagagatgggaattggttcagatgcctggact
agtggttccacgttttgcggacttgtggttctccagcttttgtcaattctaatctataca
gttcataacgtaaatgctgaagctgaaagcagtaacctgtcttatgcggaaattttgcag
cgatctgtcttgctgcagaatgcattcactgcttcctttggatttgcagggtgcattatt
agcagatgcttgaatgtggatgatgttttctcatgcccattcttgccagcaatattagtc
ttcatggaatggctggcctgcaggcgggatgttgcattgggtaatgaatctgttgaagag
aagcaagccaaggcaagaacactgttttggacaaaatgtgttattttcttgaacaaatta
ttggaccttgaaaaggtttgccaagattctaatggaggtaggttggaaaatgaggccgct
ttcacttcacttaacaggtataacgaggaggaagcaggtggtgttgcattatgggaggat
tttgaactaaggggatttttgccattagcaccagcacagcttgctttggatttttctaaa
caacattctctcagtggaaagaaagaaaggaacattagggtgcaaaggatcctggcagct
gggaaggctgttggaaatttactcgaaggctctgggcaaggaatgtcttatgatgctgat
atgatgatttttcatgttgctggaagttatcctgaatacaaaaagaaaaaagaatctgaa
gccatcaagccaaagatcacaaaatcaatgaacaatcttgataatcatgtacaggtgatt
ggacctgaaactgtaaagcaagatatatcttacatagaaaaacctgtgatcagttcttca
gttgctatgattgtgaagtcagattcagatagagaacaagaagaagaggatgaagtaatt
gtattcaaacctattgtagccgaaaagcatcccgagtctgtagctctgaacccacagcag
tcatctgtcactgttagtgcaaattcaagttttcatgatatgactacagccattacacct
cgagaattgcaacaaaaatcaaatgtggtctcatcggtagagatcccttttcatatttct
cagtcctctgccgcattgacaggagcaatggacgttttgtctggagcatattcaaatcct
caagaagtctcaaagttatttgggggctctgcaagtactgtagatcattggtcaactggc
attggattatctgcgcctggaattgctagttctcttggtagttggggtatgacaggttat
ggagtaccatttggaaacaaccatacgagtctcacgagcatggtaaatgtaaacaaccat
acaagcctcccaagcatggtaaatgtaagtcaacaatctgctcagcttataaatcagtca
aaccctttatggtatggagatcgtgaggcacatgttttggaagggataataaacctaaac
ctccatcagtttgcagggaatgggtctatgtttggatcagagcttccagctggtatgaat
gggaaagttgaatttgctcctgcaaatctgagcatgttaccttctcaagatctgcattca
tcaattgcacacaatagtggaatttctgtgggtgcagtagcttctggtatgtcagggaat
ccacttttatgtgatccttccttaggcacagcttcgacatactccaaccaacaaaaagtt
tctgttgaactggatgtagcaaaatctgaggtactgccacgatctgagtttggtacatta
acatcatcaactacaagtgtgacttcaaaggcttcaagcatccctacagtaagttctaca
gtgatctctaagaaggggcctgtgagtagacccgttcgacattttggacctccacctggc
tttggtcctgtaccctcaagaccactagacagcaaggttgattcgatgcaacgtggttct
gctgcatcaaacataagtgagaaggtgattcagaagaacgagcaaccccagctggatgac
tacagttggttagatggatatacgccactgaataaagacggagggagaaaagattctctt
ttgcctcactcaggctactactccttgccagcgagtgacagcctgatcaatgctgctaca
acatttccttttccaggcagacaggttccaaatatgaagttgtgtgaagaacagcagcaa
cttcaatataacaggaggagccaagaacaatcgctgtggtctgagcaatactttggtcga
gatccttga
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