Cryptomeria japonica (Japanese cedar): 131053455
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Entry
131053455 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131053455
03420 Nucleotide excision repair
131053455
03430 Mismatch repair
131053455
03440 Homologous recombination
131053455
03460 Fanconi anemia pathway
131053455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131053455
03032 DNA replication proteins [BR:
cjf03032
]
131053455
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131053455
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131053455
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131053455
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131053455
MMR (mismatch excision repair)
131053455
DSBR (double strand breaks repair)
HR (homologous recombination)
131053455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
tRNA_anti-codon
Rep-A_N
OB_MEIOB_N
DUF223
DHquinase_II
Motif
Other DBs
NCBI-GeneID:
131053455
NCBI-ProteinID:
XP_057844047
LinkDB
All DBs
Position
4:complement(502806306..502831143)
Genome browser
AA seq
728 aa
AA seq
DB search
MRSPANCYWDLQRTERVTTVWQIRGNCGPYQLGGPKGGHENGGPGGYGNPSSYCPAKDVL
KTIEITKDKVDLEVETWHNLEQNREGSVVDTTFPQVGNITSHVANSKGFLETSVALNELL
LYLLHYCVRNLLLDTSLQFADGGDFFALFTFAESKEKKTEALKICFKFADDENDNARYKV
VLSDATHMQLAILPPKYSGLLLSETLKIGTILSLIAYGCRNVWNSRTIIIFSLAVKFTNS
PLLGKPRYLFKEQEQQMLGRDTPATTKRSLKFGIHLPPVQHESSVNISPIKALNPLQNKW
TIKGCVTNKRKMHQYSTPKSTGQVFSFDMIDSEGTEIRITCFGDVAEMHYHRVEPGTYYT
VSKGCVKEANTKWNKLNSHLEITLDNNSILKHCDDVVECEVNNSQFTPINEITYCTNNTL
VDVIGIVVVVGEPSLIRRKDGSEVTKRIVKINDASTFTIDVNLWGETWQGLGEDLKSMHT
TQTAVVLAVRNARVGYFNGKVVNTTTATTLNINPSIPEIETLMSRGKISDALLPLSCVAG
QLNSQYSRMTITAVLERTSVLSETVEITIRAIVRIIKTDSFCYPACPLKFNGKECKKKCT
QQSDNQWFCSRCQTTVPECNYKYLLQMKLQDHTGALWATAFDEVGTNILQISAKELYMLQ
YDLTTQKTPQSIIKHVLLSSFVFTLSITTDMYNSEPRLKATITKVARIDYQAESALLLAE
IARMTTTA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgagatccccagccaattgctactgggacctgcagagaactgaacgtgtgaccacagtt
tggcaaataaggggaaactgtggcccttatcaacttggtggacctaaaggaggtcatgaa
aatggtgggcctggaggatatgggaacccaagcagttactgccctgctaaggatgtgctg
aagacgattgaaattaccaaggacaaagtggacctggaagtggagacatggcacaatctg
gagcagaacagggagggcagtgttgttgatactacattcccacaagttggaaacattact
tcgcatgttgcaaactcgaagggttttttggaaactagcgttgcgttaaacgagctgttg
ctttaccttctccactactgtgttcgtaatcttttgttggacacttctttgcagtttgca
gacggtggtgatttctttgccctgtttacgtttgctgaatcaaaggagaaaaagacagaa
gctctgaagatttgtttcaagtttgcagacgatgaaaatgacaatgcccggtataaggtt
gttttgtctgatgccacacacatgcaattggcgatcctcccacctaagtatagtggtttg
ctgctttcagagacattaaagattggcactatcctatcattgatagcctatggttgtaga
aatgtttggaactcaaggactataataatattcagccttgctgtcaaatttaccaattct
ccattgcttgggaaacctagatatctgtttaaagagcaagaacaacaaatgttgggtcga
gacacacctgccacaactaaacgatcccttaaatttggaattcacctcccacctgtgcag
catgaatcttctgttaatatcagcccgattaaagccttgaaccccttgcaaaataaatgg
acaataaaggggtgtgtgacaaacaagaggaagatgcatcaatacagtacaccaaagtcc
actggccaagtatttagctttgacatgatagatagtgaaggtactgaaattagaataact
tgctttggcgatgtagcagaaatgcattatcatagggttgaaccaggaacatattatact
gtgtcaaaaggttgtgttaaagaagctaacactaaatggaataagcttaacagccatctt
gagataactttggacaacaattcaatattgaagcattgtgatgatgttgttgaatgtgaa
gtaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaacacttta
gttgatgttattggtattgtagttgttgttggagaaccctcattaattcgcaggaaggat
ggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcaacttttactatcgat
gttaacttatggggagaaacatggcaagggctaggtgaagatttgaagagcatgcacaca
acccaaacagctgttgtccttgcagtcagaaatgctcgtgttggttatttcaatggaaag
gtggtcaacacaaccacagcaacaaccctaaatataaacccttctatacctgaaatagag
acacttatgtcaagaggaaagatttcagatgcccttttaccgctatcatgtgttgctggc
cagcttaactcacaatacagtaggatgacaatcacagctgttttagagcgtacaagtgtt
ctctctgaaacagttgaaattactattagggctattgtgagaatcattaaaactgattct
ttttgctatccagcctgccctttgaaatttaatggaaaagaatgtaaaaagaaatgcacc
cagcaaagtgataatcaatggttttgttcaagatgtcaaactactgtgccagaatgcaat
tacaaatacttattgcagatgaagctccaagatcatacaggggctctttgggctactgcc
tttgatgaggttggcacaaatatactgcaaatatctgccaaggagctttacatgctgcag
tacgatttgactacacaaaaaacccctcagtccattatcaagcatgtccttttgtcttcc
tttgttttcacactctctattacaacagacatgtacaattcagaacccaggctcaaagca
acgataaccaaagttgccagaattgattaccaggctgaaagtgctcttctgcttgcagag
attgctcggatgactacaactgcatag
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integrated database retrieval system
