Cryptomeria japonica (Japanese cedar): 131053529
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Entry
131053529 CDS
T10556
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
131053529
microRNA pathway
RISC loading complex
131053529
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GFIT
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NCBI-GeneID:
131053529
NCBI-ProteinID:
XP_057844124
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Position
6:191469172..191652150
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AA seq
1730 aa
AA seq
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MEEEKQDPLMTYGKRKMFEITSFEEEISQSEDEDEEEAEEEEEDEDEIEQICSDKEATQT
NNPNAIARRYQLEVLQKALEKNTLVYLETGCGKTLIAVLLIKEIGNQMRAQKEKGIIIFL
APTVQLVVQQYEVIEINIDMKVAKYYGAKGVDGWSAQTWNDEINKHEVLVMTPQILLDVL
RHGFLQLKMVKLIIFDECHHTQGNHPYAKIMKEFYQTSQLRPKIFGMTASPVIKKGVSSS
HDCMDQIAQLEGILDSQVYALEDRRELERFVPTPSHKTIYYSPSCFNYETVKVKLTKLCE
KYEIFQESKDNTLLSKFKDYEEFIVNSRKEIQSIHRNIEYCLENLGLYCAYKAVQVFMER
CKSEINFEIEVEELHGIKRTKNIFLQETLQTLKQFLPNGMENFYSMQGVREGLLTHKVYM
FIRSLLLNRKLKEMHCIVFVERVIAAVVISSLINELDCLSNISSEYLASGNGLLETSRNK
QQSTLDQFCLGKVNVLVTTNVTEEGIDVQGCSCIIRFDLPNTVRSYIQSRGRARKPESEY
VVLIERNNETQLNLLFDIIRSEESMRDTSLNRNNICYTPKFGIADDEKMIPYNVSSTGAT
VNCDSSIDLIYKYCAKLPSDKYYSPRPEFIFRALEGKDNLHICILRLPPSAPFHEVVSHP
SVKQKAKQFACLEACKRLHEVGALDEHLIPVIETGPEEEIVNLKIKCSRGAGTTKRKELH
ITSKPEALSGYWGENHNGVKLQVYKIVFTSQGDDKGAYSNFALLLEAVLDNDVANAEIDL
HLTAGRVVRSRFIPCGTLYLDSVQIMDAKAYHEILFNGVFNKLVLRTRETNELVIAKRNI
LENKILEGIWVSSNMYFILPLELEKSYVSQSGVNIDWNCIRQCADVARSVRANTRRLHVG
ETNMKNIHLASGPLVSSDLLEKAIVTLHTGKIYCITDILHDKTAESPFPDATKYGSYSDY
FEKKYGKKLNFLKQPLLQVKQTHRPHNLLTRYGEKFKGKELDLKLKPNYIELPAELCLNL
GVPSSVIRSLYLIPSVMHRMSNLMLASQLREEIQKFSNCPFISATLIMQALTTMRCMESF
SFERLELLGDSVLKYAVSCHLFLKYDKKHEGQLSAHRSLAVCNATLHDLALRRNLPGYIR
DEPFSPSRWVAPGTHCKRIVSCFCDGKMIEESVKGIVDMEDKVVKVGKTCDKGHRWMCSK
TIADSVEALIGSYLVGGGLSAALEFMSWLNIPVAYESGLVTMAFEHSSVHPSILSSINIH
MLESQLGYVFHNKALLVEAITHASQEDSEGGCCYQRLEFLGDSVLDFLITRHLFREHPDL
TPGVLTDLRSAAVNNESFAYVAVKYNLHQYLRHGSAVLLGQITRFVRAAQNCMGAKGCPT
SPCGVKAPKVLGDIVESIAGAILVDSRFDVEHVWKIMKPLLSPIVTPETLHLHPIREVSE
LCHLEGYRIVWKKSAQEGELYLAILEVVLEDNALVGKGCNISKKSAKEEAAQQILMQLKK
HGIHHPRCSNVASDTNIRGTKQSVEEISSLKDIATTCNKESDASESIELARKKSKIIINP
AVEEAGWTREKITKKAVSQSKIADACKRKSESSQNHEIPEKKARTSMASVKSKTSQDPFH
DKKEDIVCNDAVDFYARVCVKLCMQRGGPRNNLYDACKKLKWCGPEFHLLEGAGRPHATR
FSFRVVVHIPEKGELSVDGEMKSDKKSAMDAAAMLMLSELKKQGFCSLKR
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaaaaacaggatcccctgatgacttatggtaaaagaaaaatgtttgaaata
acaagtttcgaggaagaaatcagtcagagtgaggatgaggacgaggaggaggcggaggag
gaggaggaggatgaggatgagattgaacagatttgcagtgataaagaagcaacgcagact
aataatccaaatgcaattgctcgacgatatcagttggaagtacttcaaaaagccttggaa
aagaatacgcttgtttatttggaaacaggatgtggtaagacattaattgctgtgcttctt
attaaggaaattggtaatcagatgagagcacaaaaagaaaaaggaattataatttttctt
gcacccactgttcagttggttgtccagcaatacgaagttattgaaataaatattgatatg
aaagtagcaaagtactatggggccaaaggtgttgatggctggagtgctcaaacctggaat
gatgaaataaacaaacatgaggttcttgtaatgacacctcagattcttcttgatgttttg
agacatggttttttgcaattaaaaatggttaagctaattatttttgatgagtgtcatcat
actcagggaaatcatccctatgcaaaaattatgaaagagttttatcaaacatcgcaactt
agaccaaaaatatttggaatgacggcatcaccagttataaaaaaaggtgtctcttcaagc
catgattgcatggatcaaatagctcaactagaaggcattttggattcacaggtgtatgcc
ctggaggataggagggagctagaaagatttgttcctactccaagtcacaagacaatatac
tatagtccatcttgttttaactatgaaactgtgaaagtgaagctaacgaagctttgtgag
aagtatgaaattttccaagaaagtaaagacaacactttgctgtctaagttcaaggactac
gaagaatttatagttaactcgaggaaggaaattcagagcatacacagaaacattgaatac
tgtctagagaatctcggcttgtattgtgcttataaggctgttcaagtgtttatggaaaga
tgcaagtctgagatcaattttgaaatcgaggttgaagagttgcatggcatcaaaagaaca
aaaaatatttttttacaggagacattgcagaccttaaagcagtttcttccaaatggaatg
gagaatttttacagcatgcaaggagttagagagggtcttctgactcataaagtatatatg
tttatccggtcccttctattaaataggaaattaaaggaaatgcattgtattgtatttgtt
gaaagagtgatagcagcagttgttatctcgagtttgatcaatgaacttgattgtctatca
aatattagtagtgaatatctggccagtggaaatggtttgctagaaacgagtcgaaacaaa
cagcaaagcactcttgatcaattttgtttgggcaaggtgaatgtgttggtcaccactaat
gttacagaagagggcattgacgtccaaggttgtagctgcataatccgatttgatttgcca
aatacagtccgcagctacatacagtctcgtggtcgagctcgcaaacctgagtcagaatat
gttgtacttattgagaggaacaatgaaacacaattaaatttgttgtttgatattataagg
agtgaagaatcaatgagagatacatctttgaatagaaacaatatttgctataccccaaag
tttggtattgctgatgatgaaaagatgattccttataatgtttcatcaactggagctacg
gttaactgtgactctagtattgatttaatctacaaatactgtgcaaagttgcctagtgac
aagtattattcacctcgaccagaatttatctttagggctcttgaggggaaggataatttg
catatttgtattttgagattgccaccaagtgctccattccatgaggttgtgagtcatcca
agtgtcaaacagaaagcaaagcaatttgcatgcttagaggcatgcaaaaggttgcacgaa
gttggtgcccttgatgagcatcttattcctgtcattgaaactggacctgaggaggaaatt
gtaaacttaaagatcaaatgttctagaggtgcaggaacaacaaagaggaaggaattacat
ataacatcaaaaccagaagctttatctggatattggggtgaaaatcacaatggagtaaaa
ttgcaagtctacaagatagttttcacttcacaaggcgatgacaagggagcatattcaaac
tttgctctattgcttgaagcagtattagataacgatgttgcaaatgcagagattgatctt
catttgactgcagggagagttgtcagatcgagattcataccttgtggaacattgtatttg
gactcagttcagatcatggatgctaaggcttatcatgaaatacttttcaatggagtattc
aacaaactggtcctacgaactagggaaacaaatgaactggttattgcaaagaggaatata
ttagaaaataagatactggaagggatatgggtatcttcaaacatgtattttattttgcca
ttggaacttgagaaaagttatgtttctcaaagtggagtcaacattgattggaattgcatc
cgtcaatgtgctgatgttgctagatctgtcagagctaatacaagaagattgcatgtaggt
gaaactaacatgaaaaatattcatctagcaagtggtcctttagtatcttcagatttgtta
gagaaagcaatagtcactcttcatactgggaagatttactgcattactgatatccttcat
gataagactgctgagagcccatttcctgatgcaacaaaatatggcagctatagtgactac
tttgaaaaaaagtatggcaagaagctcaatttcttgaaacagccacttctgcaggttaaa
caaactcatcgacctcataatcttctcactcgatatggtgaaaaatttaaaggtaaagaa
cttgatttgaaattgaaacctaattatatagagcttccggcagaattatgcctaaatcta
ggtgtgccaagctctgttattagatcactatacttaattccttctgtaatgcatcgcatg
agtaatttgatgttggcaagtcaactacgagaagaaatccagaagttctcaaattgccct
tttatttctgcaacacttattatgcaagcattaacaactatgaggtgcatggaaagcttc
tcatttgagcgtttggagctactgggagattcagttctaaaatatgctgttagctgtcat
cttttcttgaaatatgataaaaagcatgaaggacaattaagtgcacacagatctttggca
gtttgcaatgccactcttcatgatctagctttaagacgcaatttgccgggatatattaga
gatgaaccattcagtcctagccggtgggtggctcctggtacacactgcaaaaggattgtt
tcctgtttctgtgatggaaaaatgattgaagaatctgtaaagggtattgttgacatggag
gacaaagttgtcaaagtgggaaaaacttgtgacaaaggccataggtggatgtgctcaaag
acaattgcagactctgttgaggcactgattggatcatatttagttggaggtggtctttct
gctgctcttgagttcatgagctggttgaacatacctgtagcatatgaatctgggttagtc
actatggcatttgagcattcatctgtccatcccagtattctaagtagcataaatatacac
atgcttgaatcccaattgggatatgttttccataacaaagctttattagtagaggctata
acccatgcttcacaagaagattctgaaggaggatgctgttaccagagactggaatttctt
ggagactctgtattagattttcttatcacaaggcatctatttagagaacaccctgatctt
acaccaggtgttttgacggatttgcgttctgcagctgtcaataatgaaagttttgcatat
gtagctgtcaaatataatttacatcagtatcttcgccatggttcagccgtgcttctgggg
caaatcaccagatttgtaagggctgcgcaaaattgtatgggggcaaaaggttgtcccact
tcaccttgtggagtgaaagctccaaaggtgctaggagatatagtagaaagcattgcagga
gcaatactggtggatagcagatttgatgtggaacatgtatggaaaataatgaaacctttg
ttatctcctatagtaacaccagagacactgcatttgcatcctataagagaggtttctgaa
ctgtgccatctagagggctaccgcattgtctggaaaaaaagtgcacaggagggtgaacta
tatcttgcgattcttgaagttgttcttgaggataatgctcttgttggaaaaggatgtaat
ataagtaaaaagtctgcaaaggaagaagcagcccaacagatattaatgcaacttaagaaa
catggaattcaccatcctcggtgtagtaatgtggcttctgatactaacattagaggaact
aaacaaagtgtggaagaaatcagtagtctcaaagatattgctacaacctgcaacaaagaa
tcagatgcgagtgaaagtatagagttggcaaggaagaaatcaaaaattattataaatcca
gctgtagaagaggctgggtggacaagagagaaaattactaaaaaagctgttagtcaatca
aagattgctgatgcatgtaaaagaaaatcagaatcaagtcaaaatcatgaaattccagag
aagaaagcaaggactagtatggcttcagtgaaatctaaaacatctcaagacccttttcat
gataaaaaggaggatatagtgtgcaatgatgcagttgatttctatgcaagagtgtgtgtt
aaactgtgcatgcaaaggggaggtccacgcaacaacttgtacgatgcttgcaaaaaattg
aagtggtgtggacctgaatttcacttgttagaaggtgcaggcaggcctcacgcaaccaga
ttttcattcagagttgtagtccacattcctgaaaaaggagaattgagtgtcgacggtgag
atgaaaagtgacaagaaaagtgcgatggatgcagcagccatgctaatgctgtcggagctc
aaaaaacaaggcttctgctctttaaaacgctaa
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integrated database retrieval system
