Cryptomeria japonica (Japanese cedar): 131055897
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Entry
131055897 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131055897
03420 Nucleotide excision repair
131055897
03430 Mismatch repair
131055897
03440 Homologous recombination
131055897
03460 Fanconi anemia pathway
131055897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131055897
03032 DNA replication proteins [BR:
cjf03032
]
131055897
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131055897
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131055897
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131055897
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131055897
MMR (mismatch excision repair)
131055897
DSBR (double strand breaks repair)
HR (homologous recombination)
131055897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
CDC24_OB3
tRNA_anti-codon
OB_MEIOB_N
SH3_Rv0428c
DUF223
Motif
Other DBs
NCBI-GeneID:
131055897
NCBI-ProteinID:
XP_057846198
LinkDB
All DBs
Position
11:complement(68188213..68190548)
Genome browser
AA seq
610 aa
AA seq
DB search
MASPAASQQPSTETSEVEQHLQLTPHALLCINAGDDVPSPLLQLLSFEKLIDDENDNARY
KVVLSDATHMQLAILPPKYSGLLLSEALKIGTILSLTAYACRNVWNSRTIIIFSLAVKFT
NSPLLGKPRYLFKEQEQQMLGRDTPATTKRSLKFGIHLPPVQHESSVNISPIKALNPFQN
KWTIKGHVTNKRKMHQYSTPKSTGQVFSFDMIDSEGTEIRITCFGDVAEMHYHRVEPGTY
YTVSKGCVKEANTKWNKLNSHLEITLDNNSILKRCDDVVECEANNSQFTPINEITYCTNN
TLVDVIGIVVAVGEPSLIRRKDGSEVTKRIVKINDASAFTIDVNLWGETWQGLGEDLKSM
HTTQTAVVLAVKNARVGYFNGKVVNTTTATTLNINPSIPETETLMSRGKISDALLPLSCV
AGQLNSQYSRMTITAILERTSVLSETVESTIRAVVRIIKTDSFCYPACPLKFNGKECKKK
CTQQSDNQWFCSRCQTAVPECNYKYLLQMKLQDHTGALWATAFDEVGTNILQISAKELYM
LQYDLTTQKMPQSIIKHVLLSSFVFTLSITTDMYNSEPRLKATITKVARIDYQAENALLL
AEIAQMTTTA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgctgcctcgcaacaaccttctacagaaacttcggaagtggaacaacat
ctacaattgaccccacatgcactgctctgcatcaacgctggggatgatgtcccctctcca
ctgcttcagcttttgtcttttgaaaaattgatagacgatgaaaatgacaatgcccggtat
aaggttgttttgtctgatgccacacacatgcaattggcgatcctcccacctaagtatagt
ggtttgctgctttcagaggcattaaagattggcactatcctatcattgacagcctatgct
tgtagaaatgtttggaactcaaggactataataatattcagccttgctgtcaaatttacc
aattctccattgcttgggaaacctagatatctgtttaaagagcaagaacaacaaatgttg
ggtcgagacacacctgccacaactaaacgatcccttaaatttggaattcacctcccacct
gtgcagcacgaatcttctgttaatatcagcccgattaaagccttgaaccccttccaaaat
aaatggacaataaaggggcatgtgacaaacaagaggaagatgcatcaatacagtacacca
aagtccactggccaagtatttagctttgacatgatagatagtgaaggtactgaaattagg
ataacttgctttggcgatgtagcagaaatgcattatcatagggttgaaccaggaacatat
tatactgtgtcaaaaggttgcgttaaagaagctaacactaaatggaataagcttaacagc
catcttgagataactttggacaacaattcaatattgaagcgttgtgatgatgttgttgaa
tgtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaac
actttagttgatgttattggtattgtagttgctgttggagaaccctcattaattcgcagg
aaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcagcttttact
atcgatgttaacttatggggagaaacatggcaagggctaggtgaagatttgaagagcatg
cacacaacccaaacagctgttgtccttgcagtcaaaaatgctcgtgttggttatttcaat
ggaaaggtggtcaacacaaccacagcaacaaccctaaatataaacccttctatacctgaa
acagagacacttatgtcaagaggaaagatttcagatgcccttttaccgctatcatgtgtt
gctggccagcttaactcacaatacagtaggatgacaatcacagctattttagagcgtaca
agtgttctctctgaaacagttgaaagtactattagggctgttgtgagaatcattaaaacg
gattctttttgctatccagcctgccctttgaaatttaatggaaaagaatgtaaaaagaaa
tgcacccagcaaagtgataatcaatggttttgttcaagatgtcaaactgctgtgccagaa
tgcaattacaaatacttattgcagatgaagctccaagatcatacaggggctctttgggct
actgcctttgatgaggttggcacaaatatactgcaaatatctgccaaggagctttacatg
ctgcagtacgatttgactacacaaaaaatgcctcagtccattatcaagcatgtccttttg
tcttcctttgttttcacactctctattacaacagacatgtacaattcagaacccaggctc
aaagcgacgataaccaaagttgccagaattgattaccaggctgaaaatgctcttttgctt
gcagagattgctcagatgactacaactgcatag
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