Cryptomeria japonica (Japanese cedar): 131056795
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Entry
131056795 CDS
T10556
Name
(RefSeq) phytochrome isoform X1
KO
K12120
phytochrome A
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131056795
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
Motif
Other DBs
NCBI-GeneID:
131056795
NCBI-ProteinID:
XP_057847046
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Position
4:48442301..48462457
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AA seq
1116 aa
AA seq
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MASSSRPTNSVRSQHISRIMVQTTIDAKLHADFEEGSEEFDYSQSTAVRRSSSIGPSNTV
TAYLKHIQKAKLLQPFGCMLAIDEKTFAVIAYSENAPEMLTASPHVVPSVEKQASVGMGI
DARTIFTPSSAAALQKSAALGDVNLLNPVLVHCKNSGKPFYAILHRVDMGLVIDFEPVKA
SHVPMNAAGALQSYKLAANAISRLQNMASGDIGKLCDMVVQEIHELTGYDRVMAYKFHDD
DHGEVISELRRSDLEPYLGLHYPATDLPQASRFLFMKNKVRMICDCQATPVKVVEDKRLP
RELVLCGSTLRAPHGCHAEYMSNMGSVASLVIAVTINAKEEDGDTDGQQQQQKGRRLWGL
VVCHHTSPRFVPFPMRYACEFLMQVFAIQLNKEVELADQLREKHILRTQTLLCDMLLRDA
PMGIIREKPNIMDLVRCDGAAFYYCKNIWLLGTTPTEDQLLDIVEWISQHHIDSTGLCTD
SLTEAGYPGAALLADAVCGMAAVRINSEDLLFWFRSHTAREIKWGGAVHSASDRDDGKKM
HPRNSFKAFIDVVKKRSLPWEDVEMDAIHSLQLILRGSFKNNNENITMATIQGRFNNLKM
QGIDELYAVTNEMVRLIETATVPILAVDAAGLVNGWNTKAATVTGLSMEDALGQPLISLV
EDNSVGTLERMLYLALQGQEEENVEIELKRHGSLEENGSVRLIVNACSSKDLNNRVLGVC
FVAQDVTGEKIVMDKFTRIQGDYRAIVQNPSPLIPPMVGADEFGWCSEWNLAMEKLSGWR
REEIIDKKLLGEVFGSHTTCCHLKGQNAITEFRIVLKSAITGQETEKFPFGFFNRHGKYV
EALLSTHKKTDAEGRITGVFCFLHIASPELQQALHMQRVLEKEATKRLKALAYLRIEIKR
PLSGITFTRKLLGGTDLNEKQKQVVERSLHCERQLLKILDDMDLESIEDGYMELDTVEFI
LGALLDAVVSQVMIESEEKGLEIIHYLPKEIYTICLCGDQMRLQQILANFLGLVIQFTPQ
NGWVATKVSSSKKRLGVGVHVVHLEFRFTHPGEGLPEKMVEQILNPTQDITQEGFGLLIC
GKLLKLMNGTVQYLREEGTPSLIIIVELASGQNDES
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcctctagacctactaattctgttcgatcacagcacatttctagaataatg
gtccaaacaacaatagatgcaaagcttcatgcagattttgaagaaggcagtgaggaattt
gattactctcaatctactgctgtgaggaggtcttcaagcattggtccatcaaacacagtc
actgcttacctgaagcacatacagaaagcaaagctgcttcagccatttggatgcatgctt
gcaattgatgaaaagacttttgcagtgattgcttacagtgaaaacgcccctgaaatgctt
acagcatcacctcatgttgttcctagtgttgagaagcaggcaagtgtaggaatgggtatt
gatgccaggacaatattcacaccttctagtgctgctgcattgcagaagtctgcagcactt
ggtgacgtgaaccttctgaatcctgtgctggtccactgcaaaaattcaggtaagcccttt
tatgccatacttcatagagttgatatgggtttggtaatagattttgagcctgttaaggct
tcacatgttcccatgaatgctgctggagcactgcaatcttataaacttgctgcaaacgcg
atatcacggttgcaaaatatggccagtggagatattggtaaactgtgcgacatggttgtg
caggagatacatgaacttactgggtatgaccgagtcatggcttataaattccatgatgat
gatcatggggaagtaatatctgagcttaggagatcagatttagaaccttatttgggtctg
cactatcccgcaacagatcttccccaggcttcaagatttttgtttatgaagaacaaagtt
agaatgatttgtgattgtcaggcaacccctgtaaaagtggttgaggacaagagattgcct
cgggaattagtattgtgtggatctactttgagagctcctcatggttgccatgcagaatac
atgtccaacatgggttccgtagcatctctagtaattgctgtgacaatcaatgcaaaggaa
gaagacggagatactgatggacagcaacagcagcagaaaggaaggaggctttggggcctt
gtagtttgtcatcacaccagcccccgttttgttccatttcctatgagatatgcttgtgaa
ttcctgatgcaagtgtttgcgattcagctgaataaagaagttgaattggcagatcagctg
agagagaagcacattttgcgcacccaaacattgctctgtgatatgctgcttcgtgatgca
cctatggggattatcagagagaagcccaacatcatggatcttgtcaggtgtgatggtgct
gccttctactattgtaaaaatatttggcttcttgggacaacccctactgaggatcagtta
cttgatattgttgaatggatttctcaacaccacattgattccacaggtttgtgcacagat
agccttactgaggcagggtatcctggagctgcattgttggctgatgcagtttgtggaatg
gctgcggtgagaattaattcagaagacttgttattttggttcagatcccatactgcaaga
gaaataaaatggggaggtgccgtacacagtgccagtgatagagatgatggaaagaaaatg
catccacgaaactcgttcaaggcattcattgatgtggtcaaaaaaaggagcttaccttgg
gaagatgttgagatggatgccattcattccttgcagctgatactgagaggttctttcaaa
aacaataatgaaaatattacaatggccacaatacaaggacggttcaataatttgaaaatg
cagggaatagatgaactatatgcagtcacgaatgagatggtgagattgattgaaacagca
acagtgccaatcttggccgtcgatgccgctgggcttgtaaatggatggaatacaaaggct
gctacagtcacagggttgtcaatggaggatgctctggggcagcctttaatcagtcttgtt
gaggacaactcggttgggactctggaaaggatgctttatttggctttgcaaggacaagaa
gaggaaaatgttgaaattgagctgaaaagacatggctcactggaggaaaatggttcagta
agattaattgtaaatgcttgctcaagcaaggacctaaataacagagttttgggagtgtgt
tttgttgctcaggatgtgactggagagaagattgtgatggacaagtttactcgcattcaa
ggggattacagggcaatagttcagaatccaagtcccttgatacctcccatggttggagca
gatgaatttgggtggtgttctgagtggaatctggctatggaaaagttatctggctggaga
agggaagagataattgataaaaagctactgggagaggtttttggtagtcacacaacatgc
tgtcatcttaaaggtcagaatgcaataacagagttcaggattgtgttgaaaagtgcaata
acaggacaagagacagagaaatttccttttggatttttcaaccgtcatggtaaatatgta
gaagccttactttctactcacaagaaaactgatgcagagggaagaatcacaggagttttc
tgttttttgcatattgccagcccagagcttcaacaggcattgcatatgcagcgtgtgtta
gaaaaagaagccaccaaaagactcaaggcattggcatatcttcgaatagaaatcaaacgt
ccactttctggaatcacatttacaaggaaactgctgggaggtaccgatttgaatgaaaaa
cagaaacaagttgttgaaagaagcctacattgtgaaagacagcttttaaagatcctggat
gatatggacttagaaagcatcgaagatggttatatggaactagacactgtagaattcata
ttgggagcattgcttgatgctgttgtaagtcaggtgatgatagagtccgaagaaaaggga
ctggagattattcattatttaccgaaagaaatatataccatctgcctctgcggagatcag
atgaggcttcagcaaattttggccaatttcctaggacttgtgatacagttcacaccacaa
aatggatgggttgcaactaaagtcagttcaagcaaaaaacgtttgggtgttggtgtacat
gtcgtgcatctagaattcaggtttactcatccaggcgagggactgccagaaaaaatggtg
gaacagatcctcaaccctactcaggatatcactcaggaaggttttggattgctaatttgt
ggaaagcttttgaaacttatgaatggcactgtgcagtatcttcgagaagagggaacacca
tcgttaatcattattgttgagcttgcttcaggtcaaaatgatgaatcatag
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