KEGG   Cryptomeria japonica (Japanese cedar): 131059916
Entry
131059916         CDS       T10556                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013  Nucleocytoplasmic transport
cjf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131059916
  09122 Translation
   03013 Nucleocytoplasmic transport
    131059916
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjf03019]
    131059916
   03041 Spliceosome [BR:cjf03041]
    131059916
Messenger RNA biogenesis [BR:cjf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     131059916
Spliceosome [BR:cjf03041]
 Complex C
  Other components
   EJC/TREX
    131059916
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    131059916
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_Vps41 eIF2A Beta-prop_HPS5 Beta-prop_EIPR1 DSE1_N Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N NBCH_WD40 Tricorn_2nd WDR90_beta-prop_4th Beta-prop_NUP159_NUP214 PAC11 TRM82_WD Beta-prop_DCAF12 Beta-prop_IFT80_2nd Beta-prop_ACSF4 B-prop_COPA_B_2nd Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_IFT140_2nd Beta-prop_Nup120_160 WD_LRWD1 DUF7099 CNH Beta-prop_WDR11_1st PD40
Other DBs
NCBI-GeneID: 131059916
NCBI-ProteinID: XP_057848970
LinkDB
Position
1
AA seq 326 aa
MAGGTGDLQMQSVSESSPIFKNLHTREYISHKKKVHSVAWNCTGTKLASGSVDQTARVWH
IEPHGHSKGKDLELKGHADSVDQLCWDPKHSELVATASGDKTVRLWDARSGKCSQQVELS
GENINITFKPDGTHIAVGNRDDELTIIDVRKFKSIHKRKFNYEVNEIAWDTTGELFFLTI
GNGTVEVLAYPSLQQFHTLVAHTAGCYCIAIDPTGRYFAVGSADALVSLWDLSEMLCVRT
FTKLEWPVRTISFNHDGQYIASASEDLFIDIADVQTGRTVHQIPCRAAMNSVEWNPKYNL
LAFAGDDKNKYQADEGVFRVFGFESP
NT seq 981 nt   +upstreamnt  +downstreamnt
atggccggaggaacgggggatttgcaaatgcagagcgtttcagagagctctcccatcttc
aaaaatttgcacaccagagagtatatcagtcacaaaaagaaggtacattctgttgcttgg
aattgtactggaaccaagcttgcttcaggttctgttgatcagacagctcgcgtttggcac
attgagccacatggtcatagtaagggcaaggatttagaattaaaagggcatgctgatagt
gttgatcaattatgttgggacccaaagcattccgagttggttgctactgcctctggagat
aagactgtgcgtctttgggatgctcgcagtggaaaatgttctcagcaggttgaactcagt
ggagagaatatcaacattacttttaaacctgatggaacgcatattgctgttggaaatcgg
gatgatgaattgaccataattgatgtccgtaaattcaagtcaattcacaaacgtaaattt
aactatgaggtgaatgagatcgcctgggatacaactggagagcttttctttcttacaata
ggaaatggaacagttgaagtgcttgcatatccttctcttcaacagtttcatacgcttgtt
gctcatactgcgggttgctactgcattgctattgatccgactggaaggtactttgcagtt
ggaagtgcagatgctcttgtcagcctatgggatctttctgagatgctgtgtgtgcggacc
tttacgaagctagagtggccagtgaggacaattagctttaatcacgatgggcaatacata
gcttcagccagtgaagatctctttattgatatagctgacgttcagactggacgaacggtg
catcaaataccctgtcgagcagccatgaatagcgttgagtggaatccaaagtacaatctt
ttggcatttgcaggagatgataaaaataaatatcaagcagatgaaggtgtgttcagagtt
tttggctttgaatccccgtga

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