Cryptomeria japonica (Japanese cedar): 131060748
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Entry
131060748 CDS
T10556
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131060748
03036 Chromosome and associated proteins [BR:
cjf03036
]
131060748
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
131060748
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
131060748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
SPT6_acidic
HHH_7
YqgF
HTH_44
Spt6_S1
Tex_central_region
HHH_9
Tex_N
HHH_3
S1
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
131060748
NCBI-ProteinID:
XP_057850108
LinkDB
All DBs
Position
5:448938037..449015186
Genome browser
AA seq
2216 aa
AA seq
DB search
MSFVANLLLSKLFGLSKHVGFRSLALRYFNFGNAGSLKGESARFSVEGKLVGVLAFLGFN
MGAKTVVSDDDEEYDEDNIRDAFDIEAAEEGGEEGEEEGQDDYEKDGFIVDDVEEEVGEG
SGEENKAREKKKKKREAEGNYELDEDDYELLQEANVTGFHWSKPASKQFKRLKKAGKNND
IGAKTSFFADNEMEDGMLPEELVAEEDQLEEEDMEEEDEMADFIVDDDEVDENDLPARSR
RSKKRVAKQARGISSSDSKKARDTFGGKDKLLTCRKQGLKGKGLDEGLVDDLSSKRLEDE
FEPSVLAEKYMTGRDDQIRETDLPERFQLSEEIKGPYPQNEDALPEAKWIYERVFGSLAV
PMRKEFQHIITLDKEEVVKEISNVLQMCHDQKLEVPFIAMYRKEMCLNLLKDQEDDCIES
ADNDSRGKLRIYKALWAIDIWDRKWILLQRRKNALKAAYEKRAAEEASRDPIKLMLLDSI
LQSLDDAESERTVDDIDAKFNLHFPPDEVEVEQGQFKRPSQKSMYSICRKSGLGFVTKKF
GLTPEQLGKNLLLIYKRHEVEDASVTPDDVAAEFSGGEFRDPQSVLKGARHMMAVEISCE
PAVKEFVRHIYMEQAVLTTRPTADGNNMIDDFHQYAGVKWLCKKPIKKFDNAQWLLIQKA
EAEKLLQVNISLSKDALEKTLMPEFENYYLSHRVTQTAQLWNEQRKLILKDTLCNYILPS
MEKEVRMVLSTRAKSCLVEDYKMQLWKKVSFAPYQHSKYDNKECSEENAGTRVMACCHGS
GKDPTTFVMLDASGEVLDILFTSYLNVRSKNPGVQKRKENDWQRLSKFIMNQRPHVVVLG
ASSLRCKYLKDDIEARLKMANDHPDDPAEGLDSLDVVYADEILPRLYEMSRISQDQLPAQ
RGIVRRAVALGRYLQNPLAMVATLCGPGREILSLKLHSLEHFLTTDDRYEGAEQVMITVT
NQVGIDINLAASHEWMFAPLQFIAGLGPRKAASMQRAISSAGRVYSRRELLILGAVKRLV
SINAVGFLRVRGTGQAASGNQVMVPFDDTRIHPESYWLAKKMARDVYCKDVGQDIDDMDE
AQQKMAIEHVKSHPHLLKALDINDYAKNVEKQSDNKRWETLCDIKFELLCGFQDWRLPYR
QPDEDEQFLMLTGENEETLAEGKIVQATVRRVLDQHVICNLESGITGRIVKDDLSDDTCI
VHVEKITEGSILICRVKSVQKARYLVELTCKLNELSDQFQSRQERDFYYAEDVSIIQSEQ
EKARKEKEHTKKSFKPRMIAHPQFQNISESDAIKNLSDKDAGESIIRPSPKGPSYLTLTL
KVWDRVYAHKDIVEGGKDHRNFAGFLQLGKTLSIGEETFEGLDEVIARYVDPLVSNLKAI
LAYRKFRRGTTEEIDEALQKERNESPEIIPFCVSVSHEYPGAFVLSYVKSNTHHEYFGLY
PKGFKFRKRMFDNLDNLVAYFQKHINDLVEDSIPPIRSVAAMVPKKSLGPGQSAGGRDFG
WQGHTGIDRERSSAPGFRKGGTSFDRQPNGRGRGKRGGGGSWNEGRGDGGRGGSWNKGRG
GGGRSGSWNEGRGDGGRGGNWNEGRGGGGRGGSWNEGKKSGGRVSDSMDSGWGGGSGGGI
TDGGWGGGGSGGITDGGRNEGRGSGGRVNDSMDGGWGGGDGGITDAGWGGGGSGGSIDSG
WGAGGGGGKSTDSGQGGVNVDSGWGGGRGGGSEQAGGGSGEDNGSEGRIGGTDGGWGGTG
GGGSTDGGWGGGGGGGSTDGGWGGGGGGGGGGGGSTDGGWGGGRSGGSMDGGGGSTDGGW
GGGGGGGSTDGGGGGCRDGGWGGGGGGGSRDGGWGVGGAMNGGGGGGGGGSTDGGWGGGR
GGGRSRDGGWGGGRGRGGNRDGGWGRGGRGGRSMDGGWGRGGGGGNGEGGRSEGRGGGFG
RNRNEGRFGSNRGRWSEDKGNRWGRNSGRGRGRGSGMGGLESTFDTRQRQCSNSNTNYGI
FSHKQESDAWGSKADEWGSNSGNSNSKSTARAEWISDSGENGKNKQGNDGWDADKLSKGF
KQESDAWGSKADEWGSNSGNSNSKSPSRAEWISDSGEKGKNKQGNDGWDAGKPSQGWNSS
TVSDIDAASKDKTSGWDTVNKTGSDEMSGAEAGMPGDAWGGTEGAKTNDSWCVTEAPRSN
IGSGGSGTEGKNDELAMDRVGTENDGGACGWAKDSDGWGQAMAGGSVNAGGSGWGS
NT seq
6651 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgtagctaatctcttattatctaagctttttgggctttctaagcatgttggt
tttcgctctttggcgctgcgttacttcaatttcggcaatgccggaagtctgaaaggtgaa
agcgcacgattttcggtcgagggcaaacttgttggggttcttgcatttcttggtttcaac
atgggagccaaaactgttgtttctgacgatgacgaagagtatgatgaagacaatatcagg
gatgcctttgatatagaggcagctgaagaagggggtgaagagggtgaagaagaggggcag
gatgattatgaaaaagatggtttcattgttgatgatgttgaagaagaggttggagaaggt
agtggtgaagaaaataaggcaagagaaaagaagaaaaagaaaagggaggcagaagggaat
tatgaacttgatgaagatgactatgaattgctacaggaagccaatgttactggctttcac
tggtctaagcctgctagcaagcaatttaagcgtcttaagaaggctgggaagaacaatgac
ataggggcaaaaacaagcttttttgctgacaatgagatggaggatggaatgctcccagaa
gagcttgtcgcagaggaagaccaacttgaagaagaggacatggaggaagaagatgagatg
gcagattttatagttgatgatgatgaagtggatgaaaacgatttacctgcaaggagtagg
agatcgaaaaagagagtggccaagcaagctcgaggcatttcatcttcagattcgaagaaa
gcacgagacacatttggtggcaaggacaaacttttgacttgtcgaaagcaagggttgaaa
ggaaaaggcttggatgaggggctggttgatgatctaagctcaaaaagattagaggatgag
tttgagccaagtgttttagccgaaaagtatatgacaggaagggatgatcaaatacgagaa
acagatttgccagagcgctttcaattgtctgaagagataaaaggcccatatccacagaac
gaggatgcgttacctgaggcaaagtggatatatgagcgagtatttggttcactggccgta
ccgatgaggaaggaattccagcacattataactctggacaaggaagaagttgtaaaggaa
atttctaatgtattgcagatgtgtcatgaccaaaaattggaagttcctttcattgctatg
tatcggaaggagatgtgcctcaatttacttaaggatcaagaggatgactgtatagaatct
gccgataatgactcaaggggtaaattgagaatatacaaggcactttgggcaatagatatc
tgggatagaaagtggattttacttcaaagaaggaaaaatgctctcaaagcagcttatgag
aagcgtgctgctgaagaagcaagtagagatcctatcaaattgatgctgttagattcaatt
ttgcagtcgcttgatgatgcagagtctgaacgaactgttgatgatatagatgcaaaattt
aacttgcattttcctcctgatgaggttgaggtagaacaaggtcagttcaaaagaccaagc
cagaaatctatgtacagcatttgtcgtaagtctggattgggatttgtaacaaaaaagttt
ggcctaactcccgagcaactcggcaaaaatctattgcttatttataagaggcatgaagtt
gaagacgctagtgttacacctgatgatgttgcagctgaattctccggtggagaatttaga
gacccccaatcagtccttaaaggtgccaggcacatgatggcagttgagataagttgtgag
ccagctgttaaggaatttgtccgccatatctatatggagcaggcagttttaactacacgg
cccacagctgatggcaacaatatgattgatgacttccatcagtatgctggggtgaaatgg
ttatgtaaaaagcctataaaaaagtttgataatgcacaatggcttctcattcagaaagct
gaagcagagaaacttcttcaagttaacatttctctgtcaaaagatgcattagagaaaact
ttaatgcctgaatttgaaaattactaccttagtcatagggtgacccaaactgctcagtta
tggaatgagcagcgcaaattaatactgaaggataccctttgcaactacattctacctagt
atggagaaggaagttcgaatggtattatctacaagagcgaaaagttgtctggttgaggat
tataagatgcagctctggaagaaagtgtcatttgctccttatcagcatagtaaatatgat
aacaaggagtgttctgaagaaaatgctggaacacgtgtaatggcctgctgccacgggtct
ggtaaagatcctacaacatttgtgatgctcgatgcttcaggcgaagtgttggatattctt
tttacatcatatttaaatgtccggtcaaagaatccaggggtgcaaaaacgaaaggaaaat
gactggcagcggctttcaaagtttataatgaatcaacggcctcatgttgttgttttggga
gcctcaagtttacgttgtaaatacttgaaggatgatattgaggctaggttgaagatggcg
aatgatcatccagatgacccagcagagggactggattcattagatgttgtttatgcagat
gaaattcttcctcgcctttatgaaatgtctcgcatctcccaggatcagctaccagcacag
agaggtattgtgcggcgcgccgtggctcttggtcggtatttgcaaaatccattggccatg
gttgcaacattatgtggtcctggcagagagatattatcattgaagcttcattcactagaa
cattttcttactacagatgatagatatgagggtgctgagcaggtaatgatcacagtaacg
aaccaagttggcattgacataaatctggcagcatcacatgaatggatgtttgccccgttg
caatttattgccggccttggaccaagaaaagctgcttccatgcaaagggctatttcaagt
gctgggcgggtttacagtcgtagagagttgttgattctaggagcagtcaagcggcttgtg
tctataaatgctgttggtttcttgagagttagagggactggacaagctgcatctggtaac
caagtcatggttccatttgatgataccagaattcatccggagtcatattggctggccaag
aaaatggctagggatgtatattgtaaagatgtggggcaggatatagatgacatggatgaa
gcacaacaaaagatggcaattgaacatgtcaaaagtcatccacatctgctgaaggccctt
gatattaatgactatgctaaaaatgtggaaaaacaatcagacaataaaagatgggaaacc
ctttgtgacattaagtttgaactgctctgtggatttcaggattggcgactgccatataga
cagccagatgaggatgagcaatttcttatgcttacgggagaaaatgaagaaacacttgca
gaggggaagattgtacaagcaactgttcggagagttctcgatcaacatgttatttgtaat
ctggaatcaggcataacaggaaggattgtaaaggacgatctttctgatgatacatgcata
gttcatgtggaaaagatcacagaaggtagcattcttatctgtcgggtgaaaagtgtacag
aaagcaagatacttggttgagttgacatgcaaactgaatgagttgagtgatcagtttcaa
agtagacaggaaagggatttttattatgcagaagacgtatccattatacaaagtgaacaa
gagaaagcacggaaagaaaaggagcacacaaagaaatcattcaaacctcggatgattgca
cacccgcaattccagaatatttctgaaagtgatgccattaagaatctttcagataaggat
gcaggagaaagcatcattcgtccgagtccgaaagggccatcctatctgacattaacattg
aaagtatgggatagagtttatgctcacaaagatattgttgagggaggcaaagatcacagg
aattttgcaggcttccttcaacttgggaaaactctttcaatcggcgaggagacttttgaa
ggtcttgatgaggtcatagctagatatgtagatccactagtaagcaatttgaaagcaatt
cttgcttacaggaaattcagaaggggtacaacagaagaaattgacgaagcattgcaaaaa
gaaagaaatgaaagcccagaaataattcctttctgtgtatctgtttcacatgaatatcct
ggtgcttttgtactttcctatgttaagagtaatactcatcatgagtattttgggttatat
cctaaaggttttaagttcagaaagagaatgtttgataatcttgacaatcttgttgcctat
ttccaaaaacatattaatgatctcgttgaagattcaattcccccaataaggtctgttgcg
gcaatggttcccaagaaaagcctaggtccaggtcaatctgcaggagggagggattttggc
tggcagggtcacactggtatagatcgtgaaaggtcatcagcaccaggctttagaaaaggt
ggaaccagtttcgataggcaaccaaatggtcgaggtaggggaaagcgtggaggtggtggt
agttggaatgagggaagaggagatggtggtaggggtggtagttggaacaagggaagggga
ggtggtggtaggagtggtagttggaatgaaggaagaggagatggtggtaggggtggtaat
tggaatgagggaaggggaggtggtggtaggggtggtagttggaatgaaggaaaaaagagt
ggtggtagggtcagtgacagtatggatagtggttgggggggaggcagtggtggtggcatt
acagatggtgggtggggtggaggtggtagtggtggcattacggacggtggccggaatgaa
ggaagagggagtggtggcagggtcaatgacagtatggatggtggttggggtggaggtgat
ggtggcattacagatgctgggtggggtggaggtggcagtggtggtagcatagatagtggt
tggggtgcaggggggggtggtgggaaaagtacagatagtggtcagggtggagtaaatgta
gatagtggttggggtggaggaagaggtggtggtagtgaacaagcaggtggtggcagtggg
gaagataatgggagtgaaggaagaattggtggtacagatggtggttggggtggaacaggt
ggtgggggaagtacggatggtggttggggtggtggaggtggtgggggaagtacagatggt
ggttggggaggaggtggaggtggaggtggaggtggtgggggaagtacagatggtggctgg
ggtggaggcagaagcggtggaagtatggatggtggtgggggaagtacagatggtggttgg
ggtggaggtggaggtgggggaagtacagatggtggaggcggtggatgtagggatggtggt
tggggtggaggtggaggtggtggaagtagggatggtggttggggtgtaggtggagctatg
aatggtggtggtggaggtggaggtggtggaagtacggatggtggttggggtggaggcaga
ggtggtgggcgaagtagggatggtggttggggtggaggcagaggtagaggtggaaatagg
gatggtggttggggtagaggaggcagaggggggagaagtatggatggtggttggggtaga
ggaggaggcggtggcaatggagaaggtggtaggagtgaagggagaggtggtggatttgga
aggaacaggaatgagggtagatttggaagtaacagaggtaggtggagtgaggataagggg
aatagatggggaagaaatagtgggagaggtagaggtagaggttctggaatgggaggtctt
gagtcaacttttgacactagacagagacaatgttctaacagtaacactaattatggcatc
tttagccacaaacaagaaagtgatgcatggggatcgaaagcagatgaatggggtagcaat
tctggcaacagcaattcaaaatctactgctagagcagagtggatatcagactcgggagaa
aatgggaagaacaaacagggtaacgatggttgggatgctgacaagctgagtaaaggtttt
aaacaagaaagtgatgcatggggatcaaaagcagatgaatggggtagcaattctggcaac
agcaattcaaaatctccttctagagcagagtggatttcagactcgggagaaaaagggaag
aacaaacagggtaacgatgggtgggatgctggcaagccgagtcaaggttggaattcttcg
acagttagtgacatagatgctgcgtcaaaggataaaacaagtggatgggacactgtcaat
aaaactggtagcgatgagatgtcaggggctgaagcaggcatgcctggtgatgcatggggt
ggaactgaaggtgcaaaaactaatgattcatggtgtgtaactgaagcacccaggtcaaat
attggatcgggaggaagtggaactgaaggaaagaatgatgaattggcaatggatagagta
ggtacggagaatgatggaggagcatgtggttgggccaaagattccgatggatggggtcag
gcaatggcaggtggtagtgtcaatgctggtggtagtggctgggggtcgtag
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integrated database retrieval system
