Cryptomeria japonica (Japanese cedar): 131061473
Help
Entry
131061473 CDS
T10556
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131061473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131061473
Enzymes [BR:
cjf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131061473
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131061473
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131061473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
AIM3
Motif
Other DBs
NCBI-GeneID:
131061473
NCBI-ProteinID:
XP_059066732
LinkDB
All DBs
Position
8:complement(738169661..738171076)
Genome browser
AA seq
427 aa
AA seq
DB search
MQETRAKEASESSSESQESSSESQELESRKCENYTEPASANPPPQRRLVSLKTEQTIKGP
KFTVLTYNILADKWNESDRKHKACPAAALEWNNRKHKLVSEIIAYNADIICLQEVEEEHY
KKYFLNQFRNHGYDGRYLVKPSGNPKEGCATFFLRERFSCMEEIEVVYGNQEFCNLVGEK
LYLTGHDPQSYDPKSHSKPTQKTLRRFRANNIALILLLSFDSSLICVANTHVLANKDLPD
VKMWQAYCLLHKLEEISMEKGNDDMPMVICGDFNSFPRSAAHCLLVGNEIDQNHTHLEAG
TKYRFDANKLKRRSIELSSAYSAYFEQGVSDCGDENDDVMKRWMNPETKEPVFTHYASDF
QETLDYIFYTHNNLEVEKLLEVVDWDTVSQAEDKYIPSSGKEKEIHHSGWDPADISDLVD
EWKKSDD
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaccagagccaaagaagcaagtgaatccagcagcgagagccaagaatcgagc
agcgaaagccaagaattggagagcagaaaatgtgaaaattacacagagccagcatctgca
aatcctcctccacagcgcaggcttgtgagcctcaaaacagaacaaactatcaaaggacca
aaattcacagttttgacatacaacattctggcagacaagtggaacgaatcggacaggaaa
cacaaagcctgcccagcggctgcactggaatggaataaccgaaaacacaagttggtctct
gaaatcattgcatacaatgccgatataatttgtctgcaggaagtggaggaagagcactac
aaaaaatacttcttaaaccagttcagaaatcacggatatgatgggcgttatttggtaaaa
ccttcagggaaccctaaagaaggctgcgccaccttttttctacgtgaaagattttcttgc
atggaggaaattgaagtggtgtatgggaaccaggaattctgcaatttggtaggcgagaaa
ctttatttaacgggacatgatccgcagtcttatgatcccaagtctcattcgaagcctaca
cagaaaacacttaggcgattccgcgctaataacatagctttgattcttttgttgagtttt
gattcgagtctgatttgtgtggccaatacccatgtgttggctaataaagatctaccagat
gtgaagatgtggcaagcttattgtctgctacacaaattagaagaaatttcaatggagaaa
gggaatgatgatatgcccatggtgatctgtggtgacttcaattcttttcccagaagcgca
gcccactgtttactggtgggcaatgaaattgatcagaatcacacacatcttgaggctggt
acaaagtataggtttgatgcaaacaagttaaagaggagatctattgaattgtccagtgct
tattctgcttattttgagcaaggagtttcagattgtggtgatgaaaatgatgatgtgatg
aagcgttggatgaatccggaaaccaaagagcccgtgtttactcattatgcatctgatttt
caggagactttagattatatattttatacccacaacaatttagaggtggaaaaattattg
gaggttgtggattgggatactgtgtctcaggcggaggacaaatatattccttctagtgga
aaagaaaaagaaatacatcatagtggatgggaccctgcggatatttcagatcttgttgat
gaatggaaaaaatctgatgattga
DBGET
integrated database retrieval system
