Cryptomeria japonica (Japanese cedar): 131061474
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Entry
131061474 CDS
T10556
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131061474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131061474
Enzymes [BR:
cjf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131061474
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131061474
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131061474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
PhiKZ_gp91
Exo_endo_phos_2
DUF6002
AIM3
Motif
Other DBs
NCBI-GeneID:
131061474
NCBI-ProteinID:
XP_057851157
LinkDB
All DBs
Position
8:738107816..738109231
Genome browser
AA seq
427 aa
AA seq
DB search
MQETRANEASESSSESQESSSESQELESRKCENYTEPASTNPPPQRRLVSLKTEQTIKGP
KFTVLTYNILADKWNESDRKHKACPAAALEWNNRKHKLVSEIIAYNADIICLQEVEEEHY
KKYFLNQFRNHGYDGRYLAKPSGNPKEGCATFLLRERFSCMEEIEVVYGNQEFCNLVGEK
LYLTGHDPQSYHPKSHSKPTQKTLRRFRANNIALILLLSFDSNLICVANTHVLANKDLPD
VKMWQAYCLLHKLEEISMEKGNDDMPMVICGDFNSFPRSAAHCLLVGNEIDQNHKHLEAG
TKYRFDANKLKRRYIELSSAYSAYFEQGVSDCGDENDDVMKRWMNPQTKEPVFTHYVSDF
QETLDYIFYTHNNLEVEKLLEVVDWDTVSQAEDKYIPSSGKEKEIHHSGWDTADTSDLVE
EWKKSYD
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaccagagccaatgaagcaagtgaatccagcagcgagagccaagaatcgagc
agcgaaagccaagaattggagagcagaaaatgtgaaaattacacagagccagcatctaca
aatcctcctccacagcgcaggcttgtgagcctcaaaacagaacaaactatcaaaggacca
aaattcacagttttgacatacaacattctggcagacaagtggaacgaatcggacaggaaa
cacaaagcctgcccagcggctgcactggaatggaataaccgaaaacacaagttggtctct
gaaatcattgcatacaatgccgatataatttgtctgcaggaagtggaggaagagcactac
aaaaaatacttcttaaaccagttcagaaatcacggatatgatgggcgttatttggcaaaa
ccttcagggaaccctaaagaaggctgcgccacctttctgctacgtgaaagattttcttgc
atggaggaaattgaagtggtgtatgggaaccaggaattctgcaatttggtgggcgagaaa
ctttatttaacgggacatgatccgcagtcttatcatcccaagtctcattcaaagcctaca
cagaaaacacttaggcgattccgcgctaataacatagctttgattcttttgttgagtttt
gattcgaatctgatttgtgtggccaatacccatgtgttggctaataaagatctaccagat
gtgaagatgtggcaagcttattgtctgctacacaaattagaagaaatttcaatggagaaa
gggaatgatgatatgcccatggtgatctgtggtgacttcaattcttttcccagaagcgca
gcccactgtttactggtgggcaatgaaattgatcagaatcacaaacatcttgaggctggt
acaaagtataggtttgatgcaaacaagttaaagaggagatatattgaattgtccagtgct
tattctgcttattttgagcaaggagtttcagattgtggtgatgaaaatgatgatgtgatg
aagcgttggatgaatccgcaaaccaaagagcccgtgtttactcattatgtatctgatttt
caggagactttagattatatattttatacccacaacaatttagaggtggaaaaattattg
gaggttgtggattgggatactgtgtctcaggcggaggacaaatatattccttctagtgga
aaagaaaaagaaatacatcatagtggatgggatactgcggatacttcagatcttgttgag
gaatggaaaaaatcttatgattga
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