Cryptomeria japonica (Japanese cedar): 131061536
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Entry
131061536 CDS
T10556
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131061536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131061536
Enzymes [BR:
cjf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131061536
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131061536
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131061536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
131061536
NCBI-ProteinID:
XP_057851261
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All DBs
Position
2:662913526..663059327
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AA seq
417 aa
AA seq
DB search
MSSMLGGAKLGALQMIDKARISSLPVLSSCGLYRIRGFSRAMSGTVSSYLPEFVSVDDKI
WAVKNISEGSIIRIASYNILAQAYIRSTLFPHSPAHCLKWKARSQSVLALLKSLEADFLC
LQELDEFETFYKGNMDKHGYSSVYIQRSGRKRDGCGIFYKRERAELLLEEVIQYNDLVPV
DEVPAESYEVEEKETSNPENCRDSSPTKTSGSQQTNLLDDRGDPDDPKVRLKRDCVGLLT
AFKLLEPPHHVIVVANTHIYWDPEWVDVKLAQVKYLLLQLANFKDTISTKFDCRPLVFVT
GDFNSTPGDEVYQYLISGISQYDNGYSYKTNTKEASSGSPIALHSLYAYIGGEPPFTNYT
PGFTGTLDYILFSSPNHVQPIRVLKLPSDESPDIQGGLPNENHPSDHLPIGADFEIH
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaatgttgggaggtgcaaagttgggcgcccttcaaatgattgataaagcacgc
atttcctccttgcctgtactatcatcttgtgggctttaccgtatacggggattttcaaga
gcaatgtcaggaacagtctcatcatacttgcctgaatttgtttcggtggatgataaaatt
tgggctgtcaaaaacatttcagagggttctatcattcgcattgcttcatacaacattctt
gctcaggcatacataaggagcacattatttccacattctccagcacattgcctcaaatgg
aaggctcgttcacagtccgttttagcattactaaaaagtttggaggctgatttcctctgt
ttgcaggaattggatgagtttgaaacattttacaaaggaaatatggataagcatgggtat
tcatctgtgtatatccaacgaagtggacgcaagcgtgatggctgtggcattttttacaag
cgtgaacgagcagagctactgttagaagaagtcattcaatacaatgaccttgttcctgtt
gatgaagttccagcagagtcatatgaggtggaggagaaggaaacatcaaatcctgaaaac
tgcagagattcttcaccaactaaaacatcaggatctcaacaaacgaatttgcttgatgat
agaggagatccagatgatcctaaggtgagattgaagcgggattgtgttggattattaaca
gcattcaaacttctcgagcctcctcaccatgtgattgtagttgcaaacacacatatttac
tgggatccggaatgggtggatgtaaaacttgcccaagtaaagtatcttctcttgcagctt
gcaaacttcaaagacacaatctcaacaaaatttgactgtaggcctctggtatttgttaca
ggggacttcaattctactccaggagatgaggtgtaccagtacctcatatcaggtatttca
cagtatgataatggttattcttacaaaactaatacaaaagaagcatctagtggaagtcct
atagcactacacagtctctatgcatatataggaggagagcccccgtttacaaattacaca
cctggtttcactgggacacttgattatattttgttctcaagtcctaatcatgtgcaacct
atcagagttctcaaattgccatctgatgaatcgcctgacatacaaggtggattaccaaat
gaaaatcatcccagtgatcacttgcccattggggcagattttgaaattcactga
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