Cryptomeria japonica (Japanese cedar): 131061569
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Entry
131061569 CDS
T10556
Name
(RefSeq) uncharacterized protein LOC131061569
KO
K06100
symplekin
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131061569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131061569
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131061569
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131061569
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131061569
U7-dependent histone pre-mRNA processing factors
131061569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
131061569
NCBI-ProteinID:
XP_057851293
LinkDB
All DBs
Position
6:complement(141350890..141511300)
Genome browser
AA seq
1363 aa
AA seq
DB search
MEMVGMMAGKNSHLLSLLNVAENHAEAGPRIESLKHVKDILLLQRERDPALLQEFVAHLP
DLQTAPFSSVRKYLAEMIQEIGLKNMEHLSAMLPVLLTLLKDDVPAVVRQSIASGTNLIR
NALELVSLQVSYSGKLDKWLEDLWSEMVKFKDAVYPFAFQPGSDGVKLLAVKFVEITILL
FTPDSNGSQPPLTQQNTDGKSRSFNISSLVGERPFLDQAMLGQEASKNLGLMLEQLRSPD
VTMLQSSVVIVLINSLAAIAKKRPALCGRIMPVLLGFDPNTEAGRGGQVASVLHALKTAF
LGILKCTHHGAMPWRDRLLTALRAMNAGEVAEQALRQVDRMLRNAERASRDPRFTKEERS
AMSLYGVETVKKRPIVHDNGSSGDIDEMPGKRLRSTLQNLPTVQLPQTTSSTMQDNGPSN
GVSSLDGQMNPVQQMITMIGALLAEGERGAESLEILISKIHPDLLADIVIANMQYLPASP
PPVSNRVVNLSASTGLQANTSGKVSQATSLSTNISQATASQSIVSQAMPSSSSTSQTSPS
TSILNSSAVDVAMPQQVPLDVRRDPRRDPRRMDPRRMAIPVGVSLSSAKAEDTRVKTSSP
VVATSVILPVTKSESVSASTVGHVESTLLHLNDSNPMEIKTGNMEEVHDLSPELATPTPV
VAGSISVNTGAVELLPLRSATTVESESRMEVDSCAETNLSSSDVSSTTTSEAPMPQLTMV
QPYINLTEEQQAFLSKMAFTRIVAAYNQAGTAGGGDLRRALLALLVAQCETGNDAVGVLQ
KHIVADYQNHKGHDLTLHVLYHLYEQIVSQPKELVSSEVASSVYEKFLLAVAQALRDSLP
PSDKSLSKLLGEAPFLPESALTLLEGLCNPGTSDHHEKDMVNGDRVTQGLGAVWSLILLR
PLTRNACLNIALQCAVHDLDEVRAKAIRLVANKLYPLDYISQNIEQFATKMLLSVVDAQQ
VSGGTHDSSASDETCSRINKENVQKKMPNGEESVTEGKAFTIENTAENDSQQVTRHASTV
SMAKAQRCMSLYFALCSKKHGLLQKVFIIYGQAPKAVKQAVHRHIPTLVRAIGSSSSELL
EIISDPPHGSESILMQVLHILTEGTTPSKDLIETVKQLYETKLKDAGILIPMLSSLSKDE
VLPIFPRLVDLPLDKFQNALARILQGSVHTGPALTPAEVLIAIHGIDPEKDVIPLKKITD
ACSACFEQRTVFTQQVLAKVLNQLVEQTPLPLLFMRTVIQAIGAFPSLVDFVMEILSRLV
SKQIWKLPKLWVGFLKCAYQTKPHSFHVLLQLPAPQLENALNRHPTLRAPLASYASQPNV
RSTLPRTTLVVLGLAQDNLPVISISSTPQSTDAGASGKMTKDT
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgggaatgatggcggggaagaactcccatctactctctctgctaaacgtt
gctgaaaatcatgcagaagcaggtccaaggatcgaatcccttaaacacgtcaaggacatt
ttgctacttcaaagggagagggaccccgctttgttacaagagtttgtggctcatttgccc
gatctgcagacggcgccttttagttccgtgcggaaatatttagccgagatgatacaagag
attggtttgaagaatatggaacacttgtctgcgatgcttccagttttgttgacattgtta
aaagatgatgtaccagctgttgtccgtcagtctattgccagtggaacaaatttgattcga
aatgctttggaactagtttcccttcaggttagttattcaggaaaattggacaagtggctt
gaggacttatggtcagagatggtgaaatttaaagatgcagtatacccatttgcctttcag
cctggatcagatggagtaaaattgctagcagtaaaatttgttgaaataacaattttactt
tttacacctgattcaaatggatctcagccaccgttgacccagcaaaatactgatggcaag
tcaagaagttttaatatatcatcgttggttggagaacgtccatttcttgatcaagcaatg
ctaggccaggaagctagcaagaacttggggcttatgttagagcagttgcgatctcctgat
gtcacaatgcttcagagttctgtggtcattgttcttatcaacagtcttgcagcaattgcg
aagaaaaggccagcactatgtgggcgtatcatgccagtattgcttggttttgatcctaac
actgaagctggaagagggggtcaagttgcaagtgtactacatgctctcaagactgcattt
cttggaatcctgaagtgtacacaccatggggcaatgccgtggcgggatcgcttgctgaca
gctttgcgagcaatgaatgctggagaagtagcagaacaagcccttcgccaagttgacagg
atgctaagaaatgctgaacgtgcatcccgtgatccacggtttacgaaggaagaaaggtca
gcgatgagtttatatggtgtagagacagtcaagaagaggcctatagttcatgataatggc
agctcgggtgacattgacgagatgcctggaaaaagattgcgatctactctgcaaaattta
ccaacagtgcagttgcctcaaacaactagcagtacaatgcaggataatggtccttcaaat
ggggtatcatcacttgatggtcaaatgaatccagtacaacagatgattaccatgataggt
gcactgctggcagaaggagaaagaggcgccgaatcacttgagatcctcatttcaaaaatt
catccggatttgcttgccgatatagtaattgctaatatgcagtatctacctgcaagtcct
ccacctgtttctaacagggttgttaatctttcagcatccacaggtttacaagcaaataca
tcaggtaaagtatcacaagccacatccctatcaacaaacatatcacaagcaacagcttca
caatctattgtttctcaagcgatgccgtcatctagtagtacatctcaaacgagtccatct
acaagcatcttgaactcatctgcagtagatgtggctatgccccaacaagtgcctctagat
gttcggcgtgatcctcggagggatcctcggcgtatggaccctcgacgtatggcaatccct
gttggtgtatcattatcatctgcgaaggcagaagacacacgtgtgaaaacttctagtcca
gttgtagccacatctgtaattttgcctgtaacaaagagtgaaagtgtttctgctagtaca
gtggggcatgttgaatctactctcttacacctgaatgattccaatcccatggaaataaag
acaggaaacatggaggaagttcatgatttgtctccagagttggcaacacctacaccagta
gttgcaggaagcatttctgttaacactggggcagtagaacttctgccattgaggagtgct
acaactgtagaatctgagtcaagaatggaagtggattcttgtgcagaaacaaatctgtct
tcttctgatgtatcatctactacgacttcagaagctcccatgccacagttaacaatggtg
cagccatacataaatctgacagaggaacagcaagctttcttaagtaagatggcattcacc
cgtatagttgcagcatacaaccaagcaggtactgcaggtggtggggatttgcgacgagca
ctgctagcactgttagttgctcagtgtgaaacaggtaatgatgcggtgggagtcctgcag
aagcatatagtggcagattatcaaaatcataaggggcatgatctcacgttgcatgttctc
tatcatctatatgaacagattgtgtctcaaccaaaggaactcgtttcatctgaagttgct
tcatcagtttatgaaaagtttcttcttgctgtggctcaagctctgcgggattccctgcca
ccttctgacaaatcgttgagcaaattgctgggtgaagcaccttttctgcctgaatcagct
ttgacattgctagaaggcctgtgtaatccgggtacatccgatcatcatgagaaggatatg
gttaatggggatcgggtaactcaaggtctaggtgctgtttggagcctaattttactgcga
ccactcacaaggaatgcctgtttaaatattgctttgcagtgtgcagtacatgatctggat
gaagtacgagcaaaggccatacgtctggtagctaataagctttatccccttgactacatt
tcacaaaatattgagcagtttgctacaaagatgctgctatcagtagttgatgctcaacag
gtttcaggtggcacacatgattcttcagcaagtgatgaaacatgttctagaataaataag
gaaaatgttcagaagaaaatgccaaatggagaagaatctgtaacagaaggaaaagcgttt
accatagaaaacactgctgaaaatgattcacagcaggttactcgacatgcatctacagtg
tctatggcaaaagcacaacgttgcatgtcactgtactttgctctttgttcaaagaagcat
ggacttcttcagaaggttttcattatttatggacaagcaccaaaggctgtgaaacaggca
gtccatcggcacattcctacccttgtacgggccattggttcctcatcatctgaattgctt
gaaatcatctctgatcctccacatgggagtgaaagtattcttatgcaggtcttgcatatt
ttgacagaagggacaaccccttctaaggacctgattgagactgtcaaacagctatatgag
accaaactaaaggatgcaggaattctaattccgatgttgtcatcattatcaaaagatgag
gttttgcccatttttcctcgacttgttgatcttccacttgacaagttccaaaatgcactt
gctcggattttacagggttccgttcatacaggtcctgcattgacaccagctgaagttttg
attgcaatccatggaattgatccagaaaaagatgtgatacctttgaagaagataacagat
gcatgctctgcatgctttgagcagcgcactgtttttacccagcaagttctggccaaagtc
ttaaatcaactggttgaacagactcccctgcctctgctctttatgcgcacggttattcaa
gcaattggagctttcccttctctggtagattttgtaatggagatactgtctcggttagta
agcaaacagatctggaaactgcccaaattgtgggtggggttcttgaagtgtgcatatcag
acaaagccccattcatttcatgtgcttttacagttgccagcaccacaacttgaaaatgcc
ctaaacagacatcctactctgagagctcctcttgcttcttatgccagccaacccaacgtc
cggtctacacttcccaggacaacacttgtggttttgggccttgctcaggataacctgcct
gttatttcaatttcctcaaccccacagtctactgatgcaggtgcctctggaaagatgaca
aaagacacatga
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