Cryptomeria japonica (Japanese cedar): 131062418
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Entry
131062418 CDS
T10556
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131062418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131062418
03012 Translation factors [BR:
cjf03012
]
131062418
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131062418
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131062418
Translation factors [BR:
cjf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131062418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
T2SSE
AAA_16
nSTAND3
ATPase
Rad17
AAA_19
Motif
Other DBs
NCBI-GeneID:
131062418
NCBI-ProteinID:
XP_057852056
LinkDB
All DBs
Position
3:complement(459024090..459246959)
Genome browser
AA seq
893 aa
AA seq
DB search
MSISVIAIGLGKFLRCRPLVRRAGEFEQGLESSKSAGGIINVESLRASSYSVFSFRQYCT
SVVEQFSDDEYECEFETHTACSSVANIDEWKWKLSLLLHNKQEKEIVSKDEKDRRDFEQI
ASLARRMGLFSERYGKVVVASKVPLPTYRPDLDDRRPQREVSIPLGLQRRVESLLQEYLD
RIQMNESGLLGDCSLDGSDIVSESLNEDSLLEQTEAQTLDRRVLEKILQRRSWRVRNLQH
SWQESTEGQKMLSFRRSLPAYKEKDALLSAIARNQILVVSGETGCGKTTQLPQYVLESEI
EFGRGAFCNIICTQPRRISAIAVSERVATERGEQLGETVGFKVRLEGMRGKSTRLLFCTT
GVLLRRLLVDCSLKGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAE
LFSSFFGGAPMIHIPGFTYPVKAHFLEDILETTGYKLTSFNQVDDYGQEKMWKTQKQVLS
RKRKNQLTSLVEDALSKSSFERYSSRTRDSLACWTPDSIGFNLIEAILCHICRKERPGAV
LVFMTGWDDINAMRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRLIFEATPSNVRKIVLA
TNMAEASITINDIVFVVDCGKAKETSYDALNNTPCLLPSWISQASACQRRGRAGRVQPGE
CFHLYPRCVYDAFAEYQLPELLRTPLHSICLQIKSLQLGSISDFLSSALQPPEPLAVQNA
IAFLKMIGALDEKESLTNLGKYLSILPVDPKLGKMLIYGAVFRCLDPVLTIASGLSVRDP
FLLPQDKKDVADAARLRFSAKDYSDHMALVRAYEGWKDAERVGSSYEYCWRNFLSPQTMQ
AINSLRKQFSFLLKDAGLVDADASTCNELSHNQSLVRAVICAGLFPGIVSVVV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttcagtaatagcaataggactagggaaattcctacgttgtaggccattggta
aggcgggcgggggaatttgagcaggggctggaaagcagcaagagtgcaggggggattatt
aatgtggagtcattgagagcctcttcctactccgtcttctcattcagacaatattgcaca
agtgtggttgagcagttctccgacgatgaatacgaatgcgagtttgaaacccacacggct
tgttcttctgttgctaatattgatgaatggaaatggaaacttagcttgcttcttcataac
aagcaagagaaggaaatagtttccaaggatgaaaaggatagacgtgactttgagcaaatt
gcatcccttgcaagaagaatggggctctttagtgagcgatatggaaaggtggtggtggca
agcaaggtccctttgcccacctacaggcctgatctagatgacaggcgcccacagcgagag
gtttctattcctcttgggcttcaaagacgagtagagagtcttcttcaagaataccttgat
agaattcaaatgaatgaatcaggcttgttgggtgattgttctcttgatggaagtgatatt
gtgagtgaaagcttaaatgaagattcacttctggaacaaactgaagctcaaacacttgat
aggagagtcttagaaaagatactccagcgtcgaagttggagggttcgcaatcttcagcat
tcctggcaggaatcaacagaaggacaaaaaatgctgtctttccgtagatctcttcctgct
tacaaggaaaaagatgcattactctcagcaattgcaaggaatcagattttagttgtttct
ggtgagactggatgtgggaaaacaacccagcttccacagtatgtgttagaatctgagata
gaatttggtcgtggggctttctgtaacattatctgcacacagcctaggcgtatatctgca
atagcagtttctgaaagggttgctacagaaagaggagagcagttgggtgaaacagttggt
tttaaagtccgcttagaaggcatgagagggaaaagcacacgcttgcttttctgtacaaca
ggtgtcttgctgagaagattattggtggactgcagtttgaaaggtgtaacccatgtattt
gttgatgagattcatgaacgaggaatgaatgaagattttttattgattgttttgaaagat
cttttgccgcggcgacctgatctcaggcttattttaatgagtgcaactctaaatgctgag
ttattttcatctttttttggtggagcgccgatgattcatattccaggttttacttaccca
gtgaaagcgcatttcttggaggatattttggaaacaacaggctacaagttgacttcattc
aatcaagttgatgattatggccaggaaaagatgtggaaaacgcagaagcaagtattatct
cggaaaaggaagaaccagcttacatcccttgttgaggatgctctttcaaagtctagtttt
gaaagatacagttctaggactcgagattctttggcttgctggactcctgattccataggt
ttcaatttaatagaggctatcttatgccatatttgcagaaaagaaaggccaggggctgtg
ctggtattcatgacaggctgggatgatatcaatgctatgagggatcagctcaaggcacat
cctcttttaggagatcccaacagagttctattgttaacttgtcatggatccatggctact
tctgaacaaaggttgatttttgaagcaacaccttctaatgtacgaaagattgtgcttgct
acaaatatggcagaggcaagcattacaataaatgacatcgtcttcgttgtggactgtgga
aaggcaaaagagacatcatatgatgcattgaacaatactccatgtttacttccttcttgg
atatctcaggcttctgcttgccaaaggagaggcagagctggacgtgttcaacctggagaa
tgctttcatctttatccaagatgtgtgtatgatgcatttgcagaatatcagttgccagaa
cttctgagaacacctctgcactctatttgtttacaaattaagagtctgcagcttggaagc
attagtgactttttgtccagtgcattacagccaccagaaccacttgcagttcaaaatgca
attgcatttttaaagatgataggagccttggatgaaaaggaaagtttaaccaatcttgga
aaatacttatcaattcttcctgtggatcctaagcttggaaaaatgttgatttatggtgct
gttttccgctgcctagatcctgtactcacgattgcttcaggcttaagtgtcagggatcct
tttttgctaccacaagataagaaagatgtggctgatgcagcaagattacgattttcagca
aaggattacagtgatcatatggctcttgtacgtgcatatgaaggctggaaagatgctgaa
agagttggatcatcctatgaatactgttggaggaattttctttcacctcaaacaatgcag
gccataaattctcttagaaaacaatttagttttctgttgaaagatgccggtttggtggat
gccgatgctagtacctgcaatgagttgtctcataatcagtcattggtccgagcagttatt
tgtgctggcttgtttcctggaattgtttctgttgtggtatga
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