Cryptomeria japonica (Japanese cedar): 131062965
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Entry
131062965 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131062965
03420 Nucleotide excision repair
131062965
03430 Mismatch repair
131062965
03440 Homologous recombination
131062965
03460 Fanconi anemia pathway
131062965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131062965
03032 DNA replication proteins [BR:
cjf03032
]
131062965
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131062965
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131062965
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131062965
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131062965
MMR (mismatch excision repair)
131062965
DSBR (double strand breaks repair)
HR (homologous recombination)
131062965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep_fac-A_C
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
131062965
NCBI-ProteinID:
XP_059076610
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All DBs
Position
5:complement(319692395..319694583)
Genome browser
AA seq
568 aa
AA seq
DB search
MASLAATSESIDHSTIDNLAKNQEYVPTPFAIQSINAGDDLPSALLQVLSFQKMQNNTDD
TNRHKLVLSDGKYMQLGILPSKYATLIDSDILKIGTIVYTIVILSLQVKQSVCPFFGKPE
YLFKEQQPEIMSEDKPSTSKQSLQFATELPSPQTTTFENISPIKTLNPYQNKWTIKGKVT
HKRPIKAYSTATKNGHVFSFDIVDCDGSEIRITCFDEIAKLHYNRVDIGSHYIISKGSVK
EANARYNKLNSHLEITLSNTSTVKRCTNKEQADQQTAPFTPISELFQLTNNTVVDVIGLV
LYVGDIIPIHRKDGSQTQKRVVKINDLSGSTFDINLWGPIAEQKGLELKNMLTNDSVVIL
VLRNARVGYSNGKLVNIIAATTLHINPSFPEAGLLTSRGKDPLLDVPFVAKTIHIDGKYT
RMTISSIREQMSIRPETIQTTLLAILRYVNVNDQHFYYTACPLIVNGRPCKKKCTLWATA
FDEGGNHLLHKTARQLYALQNDATTIETPSLVIKRVLSHYYSFTLLVSTKTYNSESKMKV
TINKVAPVDFKAECHALLAEISCLSTET
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggcatctttagcagctacctctgaatccatagaccattccactattgataatttggca
aaaaaccaagagtatgtccctaccccttttgcaatccaatctatcaatgctggggatgac
cttccttcagctttgctacaagttttgtcatttcagaaaatgcagaacaacacagatgat
actaacagacataaattagtgttatctgatggcaaatacatgcagttgggaatcttgcct
tctaaatatgctactctgatagattcagatattctaaaaataggcacaatagtctacact
attgtaatacttagtctgcaagtgaaacaaagtgtttgcccattctttggaaaaccagaa
tatctattcaaagaacaacaaccagaaattatgtctgaggacaaaccatcaacatctaaa
cagtcgcttcagtttgcaactgaattgccatctccacaaacaacaacttttgaaaatata
agtcctataaaaactttgaatccataccaaaataaatggacaatcaaagggaaagttact
cataaacggcctattaaggcatatagcacagccaccaaaaatggccatgtctttagcttt
gacattgttgattgtgatggttctgaaattagaattacatgttttgatgagatagctaag
ttacactataaccgtgtggacataggttcacattatattatttcaaaaggatctgttaag
gaggcaaatgcaaggtacaacaaactaaacagtcatttagaaatcaccttgtctaataca
tccacagtaaaacgttgcaccaacaaagaacaagcagatcaacaaactgctcctttcaca
cctattagtgaattgtttcaactaacaaacaatacagtggttgacgttattggtcttgtt
ctatatgttggagatatcattcctattcacaggaaagatggtagtcaaacacaaaaacgt
gttgtgaaaattaatgatctatccggttcaacatttgacatcaacttatggggcccaata
gcagaacaaaagggtctggaattgaaaaatatgttgaccaatgatagtgtggtaatcctt
gtgttacgtaatgctcgtgttggctattccaatggcaagcttgtaaacataatagctgca
acaacattacatatcaacccaagttttccagaagcaggccttctaacatcaagaggaaag
gaccctttgcttgatgtaccctttgttgcaaaaactatccacatagatggaaaatatact
agaatgacaatctcttcgatccgtgagcagatgagcatcagaccagaaacaattcagaca
acattgctagctattctacgctatgtcaacgtcaatgaccaacatttctattacacagct
tgcccattgatagtcaatggaaggccttgcaagaaaaaatgtactctatgggccactgca
tttgatgagggtggcaatcacttgctacacaaaactgcaagacaactctatgcactacaa
aacgatgcaacaacaatagagacaccttccttagtgatcaagagagtactatcacattac
tattcattcacactgctggtttctactaagacatataattcagaatccaagatgaaagtg
acgattaataaagttgctcctgttgacttcaaagctgagtgccatgcactgcttgcagaa
attagttgcctgagtacagagacttag
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