Cryptomeria japonica (Japanese cedar): 131063948
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Entry
131063948 CDS
T10556
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131063948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131063948
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131063948
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_8
TPR_19
TPR_14
CFAP70_TPR_C
TPR_11
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_17
CABIN1_N
ChAPs
ANAPC3
NTF2
Motif
Other DBs
NCBI-GeneID:
131063948
NCBI-ProteinID:
XP_057853924
LinkDB
All DBs
Position
11:229136940..229304212
Genome browser
AA seq
1706 aa
AA seq
DB search
MEAPKKSSSVLKSAVEELSKGRHEEAVTLCKQLLKQPGGQNNYDALVVLGKALFASGQYD
HAETSYRRAAALSPNSLRAWQGLVELSETSEKLDKMVEACESIIEIAKSTDDNSRLTDYL
CRLGRAYAKSNDYEKASQTWSTLLGIVSVSETQRFEALCGLADAQAVIMGKSSPEPNINL
SQKEQPACSLSEIDTSRPVPLLGSIAPEDNSFSVKDKHHFYGTVEALLKEIINISPQSHR
YQDMFLKLLLDRMREAQSSGGQRYKKAQLQVMQHSMAMLSYFFSETALGLAFTMCVEDDT
DQIFGAMGMEKSVAWEGRILWLGKRFAHIYPQHGRSLVAIAYAMHCRSGYSLERIKSICE
QVLQLDLSCIIGWHVLAEIWSFQKSFSNVQQCVTKGQEAIFYFREAYGFSLKVAELRLQL
VLANAHLSLGSYDESNAYFNIIVEVAEKLGDAEALKVKYAAIEGQIKIFLAKGCFEEAWS
KLENLLAMDANNHWARAESGWLAFQRGNLDDALCLLAEAVNMNSEMEIGCLEPVIHFIRL
LAEAVNMNPGIAIYHHWLGFLYWKASENLDIYKEKAVEQFILAVKLNPSDGDAFRFLGHY
YSQVTKEMNRAIRCYQKCVTLNPEDSEAGEVLCDILNSAERETLEASICHEASQSSPRAF
WAWRRMGYIKVNQRKWSDAVGSLQHAIRGYPICADLWEALGLAYQRHGMLTAAVKAYARA
IALEGNSRVFSLIESGNIFSSLRSYKKAVEHFRLAVESAPQNLAAQYGLASGLLGMSKEC
TALGAFGWAADLTKEASEIAFATSLLFGNITAVWKLLGDIEVAYAQSLPWEVEGGDFKKE
SEAFKDSVCSWKQQRLQAAISAKHAYECALHLNPLQANLYKDIAISVELIHRFDQKEMPD
QNVWCLQEVMALGGLILEGDNAESWITMGCFSKQKAIQQHAFIRALQVDGSHALAWAQLG
KLYLVEGQKELARQAFDGARCADPLLALSWAGMSVHEYNEGVKVVLEAFASCLYAVQLMP
VAEFQLGLTKLAVSTGHLQSSKVLAAIEQAVQRAPHLPESHNLSGLVWESRQNFQRATVS
YKRARYALEKFGRAPQSCYYDISLNLVRALCQAGQAKDAVNECEALEKAGMLDSEGLQIY
AVALWQLGNNDLALSAVRKAVAISQEKIKTATVVLYCKLIYRILGQGFAMDEILKIPKEF
LQDTNFSYIAIAIAILDTNVKISHFLYHSDYLLFQHKRAPVLHSLLAVGKQLSESDTKML
AGEVHLKKALHMYPQSNLIRSQLGFLLLSSRECNSSHIAAKCAFTGLDRVPNGKESTSTL
AVLGAAAIACSDCGVSNPMFSFSTCRNRGAIGFQVILQLQRWFHLEPWNYTARYLLILNM
YQKARGEKYPHHLCQVIKRLVSSHSNLVTNKGLDICHFQELQLLLCTSEIYLQSGDYSGA
LKYATTASHLQVSNSLLFFSHLQLARCHALQNNLISLNDEYMNCLQLKTDSEIGWVTLSA
LKARYSLQGENNCATIHHGVSMGEEGCLQNMWMALLELVHGQRCIWDGDLQSAEKAIAQA
CSMWPEEGSLHLIHGAICMQLARQGFSSQFLLIAAHSLLKAQDIGHFSLPVVSILLAQAE
ASIGRGKARWERNLRLEWLAWPAEIRPAELLFQMHLLAEQSRAMSERDKNWPETSKSSRL
WLQHALHLNPSCLRYWETMKQALKLN
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgccaaagaagagcagcagcgtgctcaagtcagcagtggaggagttgtcgaag
ggcaggcacgaggaggcggtcacattgtgcaagcaacttcttaagcagcccggcggacaa
aataactatgatgcccttgttgtgctcggcaaagccctctttgcaagcggccaatatgac
cacgcggaaacttcctatcgccgcgctgctgcgctcagtccaaattctctgcgagcttgg
cagggacttgttgagttatctgaaacatctgaaaaattggataagatggtggaggcgtgc
gagtcaattattgaaatagccaagtcaacagatgataactcacgcctgacagattattta
tgcaggcttggaagggcatatgccaaatctaatgattatgaaaaagcatctcagacatgg
agcactctcttgggtattgtgtcagtatcagaaactcagagatttgaagcactttgtggt
cttgcagatgctcaggctgtaataatgggaaagtcgagtccagagcctaacataaatctc
tcacaaaaagagcagcctgcctgttcattatctgagatagatacaagcaggcctgttcct
ttgctaggttctattgctccagaagataattcattctctgtgaaagataaacaccatttt
tatggtacagttgaagcattattgaaggaaatcattaacatatctccccaatcacataga
tatcaagatatgtttctaaaacttctgcttgatcgcatgcgagaagctcaatcttcagga
ggacagagatacaagaaggcacaattgcaagtcatgcagcattctatggctatgctatcc
tactttttttcagaaacagcactgggattagcatttactatgtgtgtggaagatgatact
gatcagatttttggagctatgggaatggaaaaatcagttgcttgggaaggacggattctg
tggttgggaaaacgttttgctcatatctatccacaacatggcagatctcttgtagccatt
gcttatgctatgcattgcagatctgggtacagtttggagcgcataaagtcaatttgtgag
caagtacttcagcttgacctcagttgcattattgggtggcatgttttggctgagatttgg
tcatttcaaaaatcattcagtaatgttcaacaatgtgttaccaaagggcaagaagctatt
ttttattttcgtgaagcctatgggtttagccttaaagtagccgaacttagattgcaacta
gtgttggcaaatgcacacctgtctttgggatcttacgatgagtctaatgcatattttaac
atcatagtagaggttgcagagaagcttggagatgcagaagctttaaaagtgaagtatgca
gctattgagggacaaatcaagatttttcttgctaaaggatgttttgaggaagcatggtct
aaacttgagaacttgcttgccatggatgctaataaccactgggcacgtgcggagtcaggt
tggttggcatttcagagaggaaatcttgatgatgctctatgccttttggccgaagcagtg
aatatgaattcggagatggagattggttgcttagaacccgttatacattttattcgcctt
ttggctgaagcagtgaatatgaatccaggtattgcaatctatcatcactggctgggtttc
ttgtactggaaagcaagtgaaaatttagacatctacaaggagaaagctgtagagcaattc
atcttagcagttaagttaaatccatctgatggagatgctttccgttttctggggcattat
tatagtcaagttacaaaagaaatgaacagggctataaggtgttatcagaaatgtgtcaca
ctcaaccctgaagattcagaagcaggggaagttttatgtgatattttgaattctgcggaa
cgggaaaccttggaagcatctatatgtcatgaagcttcccaaagctcgccccgagcattt
tgggcctggcgtcgtatgggctacataaaggtgaatcaacggaaatggtcagatgcagtt
ggtagccttcagcatgcaattcgtggttatccaatttgtgcagacttgtgggaagctcta
ggccttgcatatcaacgacatggaatgcttactgcagctgttaaggcgtatgcacgggct
attgcactcgagggcaattcacgtgttttctctttgattgagagcggcaatatcttctca
tcacttcgatcttataagaaagctgttgagcattttaggcttgcagtagaaagtgcaccc
caaaatcttgctgctcagtatggccttgcctctggattgcttgggatgtcaaaggagtgc
acagctcttggtgcttttggatgggctgcagatctcacaaaggaagcatctgagattgca
tttgctacttctctgttatttggaaatattactgcggtttggaagttgcttggagacata
gaggttgcatatgctcaatctttgccatgggaagtagaaggtggagacttcaaaaaggaa
agtgaggcatttaaggattctgtttgttcctggaaacagcaacgtcttcaggcagcaatt
agtgctaagcacgcttatgaatgtgcactgcacttgaatcctttgcaggcaaatctgtac
aaggatattgctatatctgttgaattaatacatcgctttgatcaaaaggaaatgcctgac
caaaatgtttggtgtttgcaagaggtcatggcattaggggggctgattcttgaaggcgac
aatgctgaatcctggataaccatgggctgtttttcaaagcagaaagcaatacagcaacat
gcatttattagagcccttcaggttgatggatcccatgctcttgcatgggcacaacttgga
aagttgtacctagttgaaggccagaaggaacttgctaggcaggcatttgatggtgctaga
tgtgcagatccattactagcattatcttgggctggcatgtcagttcatgaatacaatgaa
ggggttaaggttgttctagaggcatttgcaagctgcctttatgctgttcagttgatgccg
gtggcagagtttcaattgggtcttacaaagcttgctgtatcaacaggtcatctccagtca
tcaaaggtattggcagcaatagagcaggctgttcaacgtgcaccacatcttccagaatca
cataatctaagtggtctggtttgggaatcaagacaaaactttcaacgagcaactgtttca
tacaagcgtgcacgctatgcactggaaaagtttggcagagcaccccaaagttgttattat
gatatatcccttaatctagtgcgagccctttgtcaggcagggcaggcaaaagacgctgtt
aatgagtgtgaagccttggaaaaggcaggtatgctggacagtgaagggttacaaatatat
gcagtggcattatggcagttgggaaataatgatttggccctctctgcagttcgtaaagca
gtagccatttcccaggaaaagatcaaaactgccactgttgtgctgtactgtaaattgatt
tatcgtatattggggcagggttttgccatggatgaaatattgaagattccaaaggaattc
cttcaagatacaaatttcagctacattgccattgccattgctatccttgatactaatgtt
aagatttctcattttctttatcatagtgattatttgctatttcagcataaaagagctcct
gtacttcactctctacttgcagttggtaaacagctttcggagagtgatactaaaatgtta
gctggcgaggtacacttgaagaaggctttacatatgtaccctcaaagtaatcttatcagg
agccaactaggatttcttctactttccagcagggagtgtaatagctctcacattgcagca
aaatgtgcattcacaggtttagacagagttcctaatggaaaagagtcaacttcaactctt
gcagtgcttggtgcagctgccattgcttgtagtgattgtggagtatccaaccccatgttt
tcattctcaacatgtagaaatagaggtgcgattggatttcaggttatattacagttgcaa
aggtggtttcatctagaaccatggaactataccgctcgttatctgcttattctcaatatg
taccagaaagctcgaggagaaaaatatccacatcacctttgccaagttataaaacgatta
gtgtcttctcattcaaatttggtcacaaataagggacttgatatttgtcatttccaagag
ctccaacttctgctctgtacatctgaaatctatcttcaaagtggcgattattctggcgca
ttaaagtatgcaacaactgcgtcccatctccaagtttctaatagtttacttttcttttca
cacctacaattggcccgatgccatgcattgcaaaataatttgatatcactaaatgatgaa
tatatgaactgcttgcaactgaagacagatagtgagattggttgggtaacacttagtgct
cttaaagctagatatagcttacagggtgaaaacaactgtgctactatccatcatggggtc
tccatgggggaggaaggttgtctccagaatatgtggatggcattgctcgagttagtgcat
ggtcaaagatgtatttgggatggagatttacaatcagcagaaaaggctatagctcaagct
tgctctatgtggcctgaagaaggatccttacatcttattcatggtgcaatttgcatgcag
cttgccagacaaggtttcagttcacagttcttgttgattgctgcgcacagtcttcttaaa
gcacaagatattggccatttttcactgccagtggtttctatcctgcttgcacaagcagaa
gctagcataggcaggggaaaggctaggtgggagagaaaccttcgtttagaatggttagct
tggccagcagagattagacctgcggagttattatttcagatgcatttacttgcagagcag
agtagggccatgtcagaaagggataaaaattggcccgagacatcaaaaagttcaaggttg
tggcttcagcatgcactgcatctgaacccaagttgcttacgctattgggaaaccatgaaa
caggcattgaaacttaactga
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integrated database retrieval system
