Cryptomeria japonica (Japanese cedar): 131064504
Help
Entry
131064504 CDS
T10556
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131064504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131064504
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131064504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Exonuc_VII_S
DUF2465
Motif
Other DBs
NCBI-GeneID:
131064504
NCBI-ProteinID:
XP_057854642
LinkDB
All DBs
Position
1:complement(452375468..452460245)
Genome browser
AA seq
941 aa
AA seq
DB search
MEKDDSKLPDLKLDAKQAQGFISFYRKLPQNAQAVRFFDRRDYYTAHGDDALFIAKTYYH
TTTALRQLGNGHDALSSVSISRNMFETIIRNLLLERTDHTVELFEGSGSNWRLAKTGTPG
KLGSFEDILFASNDMQDTPVIIALQYVIRENEYLVGMAFVDLTKRTLGITEFLDDSQYSN
LESAMIALGCRECLLPLGSGKSSDNKRLHDVLASCNVLLTEKKKSDFKSRDVDQDLCRLV
KGSVESLKDLVASSECAAGALGALLSYTDLLADDSNYGKFTIQHYNIGSFMRLDAAALRA
LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVEEIKCRLDMVQAFVED
AALRQDLRLHLKRIADIDRLVRKLEKGRANLQDIVKLYQTSIRLPVIKSSLERYQGDFSL
LIRERYLDAFELWTDKEHLTKFAALVEAAVDLDQLDNGEYMISAGYDPSLMTLKNERDEV
EEQIQKVHHKAADDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLNTQYIVLETRK
DGVKFTNAKLKRLGEQYIKLSDEYSSSQRQLVNRVVQTAATFTEVFEVIANILSELDVLL
SFSDLAVSCPTPYVRPDITSSEEGDIVLKGSRHPCVEAQDGVNFIPNDCCLVRGKSWFQI
ITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDQATISIRDCIFARVGAGDCQLRGVSTFM
SEMLETAAILKGATHKSLIIIDELGRGTSTYDGFGLAWAICEYLVEVTRAPTLFATHFHE
LTALAHSEGAPVHGPPKGPPVGIANYHVSAHIDESTQKLTMLYKVEEGPCDQSFGIHVAE
FAKFPESVVALAREKAAELEDFSPVSGNVDDLKEEVRAKRKRVCGPDDMVRGASQARKFL
QEFSSLPLDKMDYEQALQEVQKLKSGLEEDAVSNPWLQQFF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggacgattccaagcttcccgacctgaaactagacgcaaagcaggcacaagga
tttatatcattctatcgaaagctaccgcaaaatgctcaggctgttcgcttcttcgaccga
cgggattactatactgctcatggggatgatgcactcttcattgcaaaaacttactaccat
accacaactgctcttcgtcagttgggtaatggacatgatgctctctctagtgtgagcatt
agcaggaatatgtttgaaacgattatcagaaacttgttgttggagaggactgaccatact
gtggagctttttgagggaagtgggtcaaattggaggttggcaaaaactgggacccctggc
aagcttggcagttttgaggacattctctttgctagcaatgacatgcaagatacgccagtg
ataatagctctgcaatatgttattcgtgagaatgaatatcttgtgggtatggcctttgtt
gacctgacaaagagaactttaggcatcaccgagtttcttgatgacagccaatactcaaac
ctggaatcagctatgatagctcttggttgtagggaatgcttgttgcctctaggcagtgga
aagtcctctgataataaacgccttcatgatgtattggcaagttgtaatgtcctcttaact
gaaaagaagaaatctgatttcaagtccagggatgttgatcaagatctttgtcgccttgta
aaaggttcagttgagtcattgaaggacttagttgctagttcagaatgtgccgctggagct
ctgggggccctcctctcttacacagatttgcttgcagatgatagcaattatggaaagttt
accattcaacattataacataggcagttttatgcggctggatgctgcggctttacgagca
ctgaatgttcttgaaagtaaaacagatgcaaacaagaacttcagtttatttggattgatg
aacaggacttgtactgctggcatggggaagaggctgttgaataggtggctcaagcaacct
ctcttagatgtagaagagatcaaatgtagactggatatggtgcaggcatttgtggaggat
gcagcattacgtcaagatttaagacttcatctaaaaagaattgcagatattgaccgactc
gtgcggaaacttgagaagggtagagccaacctacaagatattgtaaagctctatcagaca
agcatacgacttcctgtaatcaaaagttcacttgaacgatatcaaggggacttctcttta
ttgatcagggaaagatatttggatgcctttgaactttggacagacaaagagcatttgaca
aagtttgcagctcttgtggaggctgctgttgatctcgatcaacttgataatggagagtac
atgatctcagctggttacgatcctagtctgatgacacttaagaatgaacgagatgaagtg
gaagaacaaatacaaaaggtacatcataaagcagcagatgatctggatcttcctgttgac
aaggctttaaaactggacaaaggcacacaatttggacatgtatttaggattacaaagaaa
gaggaaccaaaagtacggaagaagttgaatacacagtatatagtcttagaaacacggaag
gatggggtcaaattcacaaatgccaaacttaaacgacttggggagcaatatattaagtta
tcagatgaatattcaagtagtcaaaggcaacttgttaaccgtgtggtacagacagcagcg
acatttactgaggttttcgaagtgattgccaatatactttctgaactggatgttttgctt
agtttttctgatcttgctgtgagctgtcccacaccatatgtgaggccagatatcacttca
tcggaggaaggggatattgtacttaaagggagcaggcatccttgtgttgaagctcaagat
ggtgtaaatttcataccaaatgattgctgccttgtgaggggtaaaagctggttccagatc
atcactggaccaaacatgggaggtaaatcaactttcattaggcaggttggtgttaatgtg
ctcatggcacaggttggctgttttgttccttgtgatcaagcaacaataagtattcgtgat
tgtatatttgctcgtgttggagcaggtgattgtcaacttcgaggtgtgtctacattcatg
tcagaaatgttggagactgcagctattttaaagggtgcaactcacaagtctttgataatt
attgatgaacttggacgtggtacatcaacatatgatggatttggcttggcttgggcaatt
tgtgaatacttagtagaagtgacacgagctcccacactatttgcaactcactttcatgag
cttacagccctagctcattcagaaggagcacctgttcatgggcctcccaagggcccacct
gtgggcatagcaaattatcatgtcagtgcacatattgatgaaagtacacagaagttgact
atgctctacaaggtagaggaaggaccatgtgaccagagttttgggattcatgttgccgaa
tttgctaagtttcctgaaagtgttgttgctcttgctcgggagaaagctgctgagctagaa
gatttttctcctgtttctggaaatgtggatgacctaaaagaagaggtaagggccaaacgg
aaacgcgtatgtggaccggatgacatggttagaggtgcatcccaagcaaggaagtttttg
caggagttctcatcattgccactagataaaatggactatgaacaagctttacaagaagtg
caaaaattgaaatccggcttggaggaagatgcagttagtaatccctggcttcagcagttc
ttctag
DBGET
integrated database retrieval system
