Cryptomeria japonica (Japanese cedar): 131064585
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Entry
131064585 CDS
T10556
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131064585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131064585
03036 Chromosome and associated proteins [BR:
cjf03036
]
131064585
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131064585
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
131064585
Chromatin remodeling factors
BAF complex
131064585
PBAF complex
131064585
GBAF(ncBAF) complex
131064585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Bromodomain
DEAD
QLQ
Motif
Other DBs
NCBI-GeneID:
131064585
NCBI-ProteinID:
XP_057854758
LinkDB
All DBs
Position
8:33395297..33530527
Genome browser
AA seq
2154 aa
AA seq
DB search
MLLKMAHQQQRQRRGGGGGGGYVGSFASATAPPAHQQSACNTIGCSFSDGAIIMPGWHRQ
ASSHKQQQDKVEQEQQSHLNFPQLLKPRRQLQDIQEQPAHQAHEFQDSFEGVPMQPSTIL
CEAVPQEYLHKVKMQSLQAEEYLQFAFLDAQRNASQNIHLNNFTLHDVSQLFPQLSMFRK
SPGHFLHIETQTNLQDGSRSNFLKSQQTQMTPLVGNNIEKLFDVQNQCQLKNNMPSQFMD
STQSQDLQVYSAVEQDTNIRAPPFNPDIQANLAAKHKVSDRYITEEQSNRLQTGQNIASS
SCVQNNASLTIKDSVSGSIFDSDVIYSNSLQSGMTESFPKVRNLALAECHFVPEAGDCDF
KNTWFGGNKSLDAYDNTITSFSHCSLPSSDFTQKEVITFGNNLAQGTSQMQNFSDSEQLN
QIPFNLVNRNRALQLNHSVQILCQGYGFTNQQLIVLRAQILAFKQLKHGRTIPPDVIGCI
GPLPLTEHEDQVFSETVSTGKLKHHKEQVNALNNGTRGQNLVEAKNNPEGLFLDEDARNV
TAHKNFYAQIRMHLDRSQIMLNRKNAEKLSVNGGEKKQILGMIFSENGHEKGEISSVQLR
TKENVAAVMKPDIPRGNKSDTGGNNFIMLKSSSIAVPGQTENFTGPAFEKHPMNINHVRK
YVGPLFDFPQCGKTDDFVPMSTHVYGPFTLGYDIKELLSEEGLHVFEKRRTDKLRKVNCL
LEMKRNGWKIRFDFFRKLQIEERMLRLLDVQKQLRDEIDRQQRQIMMMSDRTYCKFVRFC
ERKRTKLARNVTVSLKANHEKQLKEAFRGRKRFLKTSWINTDARLIRNRGVAKYHERMLK
EYSKMKDEDHNERMEALKNNDLDCYREMLEQQTQLSGDARDCYKILSSFLSQTEEYLQKL
GAKLIAVKNNQKVGEAIMVSASAASLQGVSEDVDRIATHAQEEEVNRDVSSACGPFRDNI
SINKYYNLAHIVNEKIMHQPSMLQGGTLHDYQLVGLQWMLSLYNNQLNGILADEMGLGKT
VQVMALIAYLMEFKGNYGPHLIIVPNAVIVNWKSELCRWLPSLSCIFYVGTKDQCTKLYA
QDVLGMKFNVLVTTYEFIMRDRAKLSKLYWKYIIIDEAHHIKDRESQLSHDLDSFQSQRR
LLLTGTPLQNDLQELWSLLNLLLPDVFNNFKVFNDWFSKPFLKDVYSNKRSEDVFLEIEK
KVIIIHRLHQILEPFMLRRQVKDVEGQLPPKVSVVLRCKISALQAAIYDWVKSTGTLRLD
PESETRRVAGNKKRQVRVYAPLKNKCIELRKVCNHPFLSYDFYGKYTNDYLVRTCGKLWV
LDRVLIKLHSAGHRVLLFSTMTKLLDILEEYLQWRDLKYRRIDGSTSLEDRETAIVDFNK
TGSECFIFLLSICAAGRSLNLQSADTVIIYDPDANPQNEQQAVARAHRIGQKKDVKVIYM
ESVVDIVTSSYVEDELRSGNMLDVEHELAGKARYMGSVESLIRSSIQQHKMDMADEVINA
GCFDQRTTQEERRMTLEALLHNEERCQAIVHDVPSMQEVNRLIARSEEEVHMFDEMDKEW
DWPGEMMKHCDIPTWLRVGSAEINAAVDVMSKKVFTGVPMEIIGTKEEEERVPAMSLQTF
HIKGVPNLKNSFYSKTKKSSCTKLQLPDKDINGRYIKDECQEYFKTSAEEKNALFVDNEE
KKPVDYLDKEEPSEEAVFKETHIKCVDKEIQRQKFVPIKCSSSAANDKGLHFGEDLKDGE
DTLSELSSQYEKLNKGYVSCRPASSQKFISLAAFEVKPVTHQLKVYEKADDGERAILPTK
NKRKRGGSHCRRWSAVKLRPYFYEKFNYNLSWRSIHCGLHTVLKQKENSIREPFNNGSGE
CGVHPMGRQLFTCEDKLLEGHTVFHSHCVDKSHEFNGPSELAESASCAGETLMCVNAQKC
KNVLSKLLCAVIKDARQRAASFLEFSEWDKNPGYSRVITNPIIAQMIMQRLDRYEYASVL
DFVADVRLMLENAIWYHNDSEEAGARRLQELFFQQMAHTFPYLNISSIKSQFSYVHAHSS
PLSAQFQENQKEIMSENRMESKAGEAGEVPSTTELVTGKMKQKQIGKEENKARIVPKVPD
TSKMLVGLSFDYPSQVSYSKKRQISKLESLCEFRWPAHLKKPRTGIGHRRHSFQ
NT seq
6465 nt
NT seq
+upstream
nt +downstream
nt
atgctattaaaaatggcgcaccagcagcaacgtcagcgccgcggcggtggtgggggaggc
ggctatgtcggatccttcgcttccgccactgcgccacctgcacatcagcagtcagcttgc
aataccattggttgctctttctctgacggcgcaattattatgccaggctggcacaggcag
gccagttcacataagcagcagcaggacaaggtcgagcaggaacagcagagtcatttgaat
ttccctcagttgctaaaacctagaaggcaactgcaagacattcaagaacaacctgctcat
caggcacatgagtttcaagatagttttgagggtgttccaatgcagccatcaacaatcttg
tgtgaggcagtaccccaagagtatttgcacaaagtcaaaatgcagagtttgcaagctgaa
gagtacctgcaatttgctttcctggatgctcagagaaatgcatctcagaacatacacctc
aataattttactctacatgacgtgagtcaactttttccacagttgtccatgttcagaaaa
tcaccaggccactttttgcacattgaaacacaaacaaatctacaagatggtagtagaagt
aattttctcaagtctcagcagacacagatgacaccattagtgggcaacaacatcgaaaaa
ttatttgatgtgcaaaatcaatgtcaattgaaaaacaatatgccttcccaattcatggat
agcactcaatcgcaagatcttcaggtatattctgccgtggaacaggatacaaacatcagg
gctcctccattcaatcctgatattcaagccaatctagcagcaaaacataaggtttctgac
agatatattacagaagaacagagtaacaggttgcagactggacaaaatattgcatcttca
tcatgtgtccagaataatgcaagtttgacaatcaaagactctgtgagtggtagcattttt
gatagtgatgtgatatactcgaattctttgcagagtggtatgactgaatcctttccaaag
gtgaggaaccttgcattggctgaatgccactttgtgcctgaagctggggattgtgatttt
aaaaacacatggtttggtggcaacaagtctcttgatgcatatgataatactataacatct
tttagtcactgttcgctaccttcttctgattttactcagaaagaagttattacttttgga
aataatctggctcaaggcacttcacaaatgcaaaatttcagtgattcagaacagttgaat
caaattcctttcaatttggttaatagaaatagggcattgcagctcaatcacagtgttcaa
attctctgtcagggctatggtttcacaaatcagcagctcattgttcttagggctcagata
ttggcattcaaacaattaaaacatggacgaactataccaccagatgtaattggatgcatt
gggccactgccacttaccgaacatgaagatcaagttttttcagaaacagtatcaactggt
aagttaaaacatcataaagaacaagtaaatgctttaaataatggaaccaggggccaaaat
ttagttgaagcaaaaaataatccagagggtttatttttagatgaagatgcaaggaatgtc
accgctcataaaaacttctatgctcaaatacgtatgcatttagatagaagccaaatcatg
cttaacagaaaaaatgcagaaaaactctctgttaatggtggtgagaagaagcaaatactg
ggaatgatatttagtgaaaatggccatgaaaaaggagagatcagtagtgttcaattgaga
acgaaggaaaatgttgcagctgtcatgaagccagacataccaagggggaacaaatctgat
acaggaggaaacaactttatcatgttgaaatcttcttccatagctgttcctggtcagact
gaaaattttactgggcctgcatttgaaaaacatccaatgaatataaatcatgtaagaaaa
tatgttggtccactttttgactttccacaatgtgggaagacagatgattttgttccaatg
tctactcatgtatacggtccttttactttaggatatgacataaaggaattgttgtctgaa
gaaggattacatgtttttgaaaagaggaggacagataagttgaggaaagtgaattgtttg
ctggaaatgaaacggaatggatggaaaattagatttgatttttttcgaaagctccaaatt
gaagaacgcatgctccgcctactagatgttcagaagcagttaagggatgaaattgatcga
cagcaacggcaaattatgatgatgtctgataggacatattgtaaatttgtgcggttttgt
gaacgtaaaaggaccaaacttgccaggaatgtcacagtctctctaaaggcaaatcatgaa
aaacaattgaaggaggcttttcgaggtcgcaaaaggtttctgaaaactagctggatcaat
acagatgctaggcttattcgtaacagaggggttgccaaataccatgagagaatgttgaag
gagtattcaaaaatgaaggatgaagaccacaatgagagaatggaagctttgaaaaataat
gatcttgactgttaccgtgaaatgttggaacagcaaactcaattatctggtgatgctcga
gattgctataaaatcttgtcttccttcttgtcacagacagaagagtatctgcagaaacta
ggagcaaaactaatagcagtaaagaataatcaaaaggtgggggaagcaataatggtctct
gcttcagctgcctcgttacagggtgtttctgaagatgttgacaggatagcaactcatgca
caggaggaggaagtgaatagagatgtttcctcagcatgtggcccatttagagataatata
tccataaacaagtattacaatttggcacatatagtaaatgaaaaaattatgcatcaacct
tccatgcttcaaggtgggacattgcatgactaccaattggttgggttgcaatggatgctt
tctttgtacaataatcagctaaatgggattttggcagatgagatgggtcttggcaagacg
gtgcaggtaatggctctgattgcatatcttatggagttcaagggaaattatgggccccac
ctcattattgtgccaaatgctgttattgtcaactggaagagtgagctgtgtcgttggctg
ccatcgttatcttgtattttttatgttggtaccaaagatcaatgcacaaaactgtatgct
caggatgttcttggcatgaagttcaatgttcttgttactacatatgaatttattatgcgt
gaccgtgcaaagctttcaaaattatattggaaatatatcatcattgatgaggcacatcac
attaaagacagagaatctcaattatcacatgatctagatagttttcagagtcagaggagg
ttgctacttacaggaactccgttacagaatgacctgcaagaactttggtcacttctcaac
ttactgctaccagatgtttttaataattttaaagtcttcaatgattggttctccaagccc
tttttaaaggatgtatattctaataagagatctgaggatgtcttccttgaaatagagaag
aaagtgatcatcattcacagattgcatcaaattttggagccattcatgcttcgtcgtcaa
gtgaaagatgttgaaggccagcttccaccaaaggtttcagtggtgctgagatgtaaaata
tcagcacttcaggcagcaatctatgattgggtaaaatccacaggtacacttaggctagat
ccagagagtgagaccaggagagtggcaggaaacaagaaacggcaagtgcgagtgtatgct
ccactcaagaacaaatgtatagaattaaggaaggtctgcaatcacccattcctaagttat
gatttttatggtaaatatacaaatgactacttggtaaggacatgtggaaagctctgggtt
cttgatagagtcttgataaagcttcatagtgcagggcatcgtgtactcttattcagtacg
atgacaaaattgcttgatattttagaagaatatttgcaatggcgtgatctgaagtataga
cggatagatggttcaactagcctagaagatagagaaacagctatagttgatttcaacaag
actggaagtgaatgctttatctttctgctcagcatttgtgctgctggaaggagtttgaat
cttcagtctgcagacacagtcattatttatgatccagatgccaacccccaaaacgagcag
caggcagtagctagggcacaccgaattggacaaaagaaagatgtcaaagttatatatatg
gaatctgttgtggacatagtaaccagctcctatgtggaagatgaattacgaagtggtaac
atgctagatgtggaacatgagttagcaggaaaagcgagatatatgggatctgtggaaagc
cttattcgaagcagcattcagcagcacaagatggacatggcagatgaggtgataaatgca
gggtgctttgatcagaggacaacccaagaggaacgccgtatgacattagaagcactttta
cataatgaagagaggtgccaagcaattgtccatgatgtaccttcaatgcaagaagtaaat
agattaattgcaagaagtgaagaggaagttcacatgtttgatgaaatggataaggaatgg
gattggcctggtgagatgatgaagcattgcgatataccaacctggcttcgtgttggttct
gctgaaataaatgcagctgtagatgtcatgtcaaagaaggtttttacaggtgtaccaatg
gagatcattggtacgaaagaagaagaggaaagggtgccggcaatgtctctgcaaactttt
catataaagggtgtaccaaacttgaagaactcattttatagtaaaactaaaaagtcttcc
tgtactaaactgcaattacctgacaaagatataaatggacgatatataaaggatgaatgc
caagagtatttcaaaacaagtgcagaagagaagaatgctttatttgtagataatgaagag
aaaaaaccagtagattacttagacaaagaggagccaagtgaagaagcagtatttaaagag
actcatataaaatgtgtagacaaggaaattcagagacaaaagtttgtacctataaaatgt
tcaagttcggctgcaaatgataagggtttgcattttggagaagatctcaaggatggggag
gatactttatcagaactatcatctcaatatgaaaagttaaataaaggatatgtatcttgt
agaccagcatcatctcaaaaattcatatccttggctgcctttgaagtgaagccagtgacc
caccaattgaaggtatatgaaaaggctgatgatggtgagagagcaattctaccaacaaaa
aataaacggaagaggggtggatcacattgccgtaggtggtctgcagtgaaactacgccca
tatttctatgagaaattcaattataatctgagttggagatccatacattgtggtttgcac
acagtacttaagcagaaagaaaattctattagagaaccatttaataatggatctggtgaa
tgtggcgtgcatccaatggggcggcaactttttacatgtgaagacaagttgctggaggga
catacagttttccactcacattgtgtggataaatcccacgagttcaatgggccctcggaa
cttgctgagtctgcaagctgtgctggtgaaacgcttatgtgtgtgaacgcgcaaaagtgt
aagaatgttctcagcaaactgctgtgtgctgttataaaggatgcaaggcaacgagcagct
agctttttggagttttctgagtgggacaagaatccaggctactccagggtcatcacgaac
cctattattgctcaaatgatcatgcaacggcttgatcgctatgagtatgccagtgtttta
gactttgtggcagatgtgcggttgatgcttgaaaatgcaatttggtatcataacgattct
gaagaggcaggagcaagaagattgcaagaactgtttttccagcaaatggcccataccttt
ccatatctgaatattagttcaataaaatcccaattttcatatgtacatgctcactcaagt
cctctttctgcacagtttcaagaaaatcaaaaagaaataatgtcagaaaacaggatggaa
agtaaagctggtgaagctggagaggtcccttctactacagagcttgttactggtaaaatg
aagcaaaagcaaataggcaaagaggagaacaaagccaggatagttcctaaggtgcctgat
actagcaaaatgttggttggactgtcctttgattacccttctcaagtttcttattctaaa
aagaggcaaatcagtaagcttgaatctctatgcgagtttcggtggcctgcccatctaaag
aaacctaggactggtattggccataggagacacagttttcagtaa
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integrated database retrieval system
