Cryptomeria japonica (Japanese cedar): 131065617
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Entry
131065617 CDS
T10556
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131065617
03460 Fanconi anemia pathway
131065617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjf03032
]
131065617
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131065617
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
131065617
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Topoisomerases
131065617
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
131065617
FA (Fanconi anemia) pathway
131065617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
zf-CCHC
Zn_ribbon_Top1
zf-CCHC_3
zf-CCHC_4
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
131065617
NCBI-ProteinID:
XP_057856162
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All DBs
Position
7:complement(423875947..424118692)
Genome browser
AA seq
847 aa
AA seq
DB search
MEIRVLNVAEKPSVAKTVAQILSHNNCQTRDGRSRYNKIFEFKYMINNQRCHMLMTSVTG
HLMELDFHDQYRKWHSCDPTVLYTAPVRKYVPQEKQELKMTLEEEARRCQWLVLWLDCDM
EGENIAFEVIDVCQASNPHLHIRRAHFSALIERDIHEAVQRLGQPNRFFTDAVDARQEID
LRIGASFTRFQTMLLQDAFLLPSSEDERKLVLSYGPCQFPTLGFVVERYWEIQAHEPEEY
WTINCSHTSEDSTATFNWARGHLFDYACAVIIYEMCVEEPTATVTNVIHQERRKYPPYPL
STIELQKRASHYFRMSSERTMKVAEELYQWGFISYPRTETDHFSENADLQAIVRDQQEHP
VWGTYAQRLLNPEEDLWRNPGNGGHDDKAHPPIHPTKFSAGESNWSPDHKKLYELVVRHF
LACVSQPALGAGTTVDIDIAGEKFSASGLMIIMKNYLEIYKYESWGGSVIPTFIRGQQFV
PTRLTLDASVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRCYVTKDPNTRFCP
TNLGEALVMGYDAMGYELWKPYLRAMMEGDMKAVSIGSKTKDEILATCLQQMKACFVGAK
SNKEKLFEAMELFFERSQRQGGGEQHAVGEIVCHCKLCQASDMVLKKKPDGKFMVGCLNF
PLCRNVVWLPGAISEAVVTNQSCNTCVPDHIFKIQFKFRRMEIPAQYSTEHLGCIGGCDG
ILKELIEICGTGPARGRQPAQAPVNSRQSACRNCGQPGHSSNECPQLPRGRPSVNSSRGG
RASSSRGRAPSTRGGRANRTSSTSSRGRRQGNGSFVSATGEQLSAGDRRCFVCGDPSHFA
NACPNRA
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggagattagggtgctgaatgtggcggagaagccatcggtggcgaagactgtggcgcaa
attctgtctcacaacaattgccaaacgagggatgggcgctcgcgttacaacaaaatattc
gaattcaaatacatgataaacaaccagcgttgtcatatgcttatgacatctgttacggga
cacctcatggagcttgatttccacgatcaatacagaaagtggcattcttgtgaccccact
gttctctataccgcgcccgtaaggaaatatgttccccaggagaaacaagagctgaagatg
accttagaagaggaggccaggagatgccaatggcttgttttatggcttgattgtgatatg
gaaggagagaacattgcatttgaggtcatagatgtgtgtcaggcttctaatcctcatctt
catatacggagagctcacttttcagctttgattgaaagagatattcatgaagctgtgcaa
aggttgggccaaccaaatcgtttctttactgatgcagttgatgccagacaggaaattgat
cttcggattggtgcctccttcacacggtttcaaactatgttattgcaagatgcttttttg
cttccttcttccgaggacgagagaaaacttgtcttaagttatggaccttgccagtttcca
actcttggttttgttgttgagagatattgggaaatacaagcacatgagccagaagaatac
tggacaataaattgttctcatacctcagaggatagcacagcaacatttaattgggcgcgg
gggcatctgttcgattatgcatgtgctgtaataatttatgaaatgtgtgtggaggaaccc
actgcaactgttacaaatgtaattcatcaagagcggcggaaatatccaccttatccacta
agcaccattgaattacaaaaacgtgcttcccattacttccgtatgagttcagaacgtacc
atgaaggtagcagaggagctataccagtggggttttattagttaccctcgtactgagact
gaccacttctcagaaaatgcagatttacaggcaatagtgcgagatcaacaagagcatcct
gtatggggaacatatgcacagcggctgcttaaccctgaagaagatctttggagaaatcct
ggcaatggaggtcatgatgacaaagcacatccacctattcacccaactaaattttcagca
ggcgaatcaaattggagtccagatcacaagaaactttatgaactggttgtacggcatttc
cttgcttgtgtatcacaacctgctctaggtgctgggacgacagttgacattgatattgct
ggtgaaaagttttcagcttctggtctcatgattataatgaaaaactacctggaaatttat
aaatatgaatcttggggaggctctgttattccaacatttattcgtggacaacagtttgtt
ccaactaggttgacacttgatgcaagtgtgacaagacctcctcctctattgagtgaagct
gacttgttgggttgtatggataaggcgggcattggtactgatgcaactatgcatgatcac
ataaagaagctcctagataggtgctatgtaactaaagatccaaatactcgattctgtcca
acaaacctgggggaggcgcttgttatgggttatgatgctatgggatatgaactctggaaa
ccataccttcgagccatgatggaaggtgacatgaaagctgtgagtataggctcaaagaca
aaagatgaaattttggctacttgcttgcagcaaatgaaagcatgctttgttggtgcgaag
tctaataaggagaaactttttgaagctatggaacttttctttgaaaggtctcaaagacaa
ggaggtggggagcaacatgctgttggagaaattgtttgtcattgtaaactttgccaagca
tctgatatggttctcaaaaaaaaaccagatggaaagttcatggttggatgcctcaatttt
ccactttgtagaaatgtcgtatggttgccaggagcaatatctgaagctgtagtgactaat
caatcttgcaacacttgcgtgccagaccacattttcaaaatccagtttaaatttcgacga
atggaaataccagcccaatacagcacagaacatttgggctgtatcggcggttgtgatggg
atcctcaaggaattgattgagatatgtggaactggcccagcaagagggcgacaacctgca
caagcacctgtaaactctcggcagagtgcatgtcggaattgtggacagccaggtcatagt
tctaatgagtgtcctcagctacctagagggcgcccatctgttaactcaagcagaggagga
agagcaagttcaagcagaggaagagcaccctcgaccagaggaggaagggcgaaccgaaca
agtagcaccagtagcagaggaagaagacagggaaatggtagttttgtaagtgccaccggt
gagcagctttctgctggagacagaaggtgctttgtttgtggagatccttcccatttcgca
aatgcttgccctaaccgtgcatga
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