Cryptomeria japonica (Japanese cedar): 131066057
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Entry
131066057 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131066057
03420 Nucleotide excision repair
131066057
03430 Mismatch repair
131066057
03440 Homologous recombination
131066057
03460 Fanconi anemia pathway
131066057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131066057
03032 DNA replication proteins [BR:
cjf03032
]
131066057
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131066057
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131066057
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131066057
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131066057
MMR (mismatch excision repair)
131066057
DSBR (double strand breaks repair)
HR (homologous recombination)
131066057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
IZUMO
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131066057
NCBI-ProteinID:
XP_057856714
LinkDB
All DBs
Position
11:156810840..156813000
Genome browser
AA seq
567 aa
AA seq
DB search
MIFSNDRSCSNGGGISSPALIDRIAYGGLADPLELTPYAIRSINAGDDIPPPLLQLLSFE
KIIGDPNDNDRYKLVLSDGTYMQVAILPTKAIIVFTLDVKKIDYHLLGKPRYLFKEQEEQ
TLGRETPPPTKHALKFGADLPSPQNGPSENISPIKSLNPYQNNWTIKGCVTNKRKMHKYT
TPKCNGQVFSFDIIDEEGCEIRITSFDEIAELHYHRIEQGASYVLSKVLKRCAPDAVGPD
KKTRFTPIDELLTTTNNTLIDVIGVVVNVGEISVIHRKDGSVVNKIIVKINDMSTLTIDV
NLWGPSSEKLGNDLKNMHTSGTFVILVVQNARVGYFNGKVINTSASTAFEINPSIPEAEP
LRLRGPIQQSLDPHPSALHCKNNQYQRMSIASILQRLSVMPEAIETTIIAVLRFVKEDPF
YYIACPLQFNRKECKKKCAKLAENLWSCPRCQTQFPECNYKYLLHMKLQDHTSIVWANAF
DNVGTELFSLSAKELYMLQYDLTTEKTPHIILKKAMFKHYTFTTLVSTDTFNSERRIKVT
IDKMQRLDFKAEYPCLLAEIAQMHAIT
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgattttttcaaatgatagaagctgcagcaatggtggagggatatcatctcctgcatta
atagatcggattgcatatgggggacttgccgatccccttgagcttaccccatatgcaatc
cgatctattaatgcaggagatgatatccctccaccattgctacagcttctatcatttgaa
aaaatcattggtgatccaaatgacaatgacagatacaaacttgtcttgtcagatggcacc
tatatgcaagtggccattttgccaaccaaggccatcattgtattcactcttgatgtgaaa
aaaatagattaccatttgcttggcaaacctcgatacctcttcaaggaacaagaagagcaa
acgttgggccgagaaaccccgccacccactaaacatgctcttaaattcggtgcagatttg
ccttccccacaaaatggtccttctgaaaatatcagccctattaaaagcttgaacccttac
caaaacaattggaccataaaaggttgcgtaacaaataagaggaagatgcataaatatacc
acgccaaaatgcaatgggcaggtttttagttttgatattatagatgaagagggttgtgaa
attagaatcacttcctttgacgaaattgctgaattacactatcatcgaatcgagcaagga
gcttcatatgttctgtccaaagttttgaagcgttgtgcccctgatgctgttgggcctgat
aaaaaaacccgcttcacccctattgatgaacttctcaccactaccaacaatactttgatt
gatgttattggtgttgttgtcaatgtcggagagatctctgtaattcatagaaaggatggc
tctgttgtaaacaagataatagtaaaaataaatgatatgtcaactttgacaatagatgtt
aacctttggggcccatcctcagaaaaactaggcaatgacttgaagaatatgcatacatct
ggaacatttgtcatccttgttgttcaaaatgcaagggttggttatttcaacggaaaagtc
ataaatacatcagcatccacagcttttgaaatcaacccttctattcctgaagctgagccc
ctccgtttaagaggccctatccaacaaagccttgatccacatccttcagctctccattgc
aaaaataaccagtatcaaagaatgtcaattgcatccatcttgcagcgccttagtgttatg
cctgaagccattgagactactattatagctgtgttgcgcttcgtaaaggaagaccccttt
tactatatagcttgcccattgcaattcaatagaaaagaatgtaaaaaaaaatgtgctaaa
ttagctgagaatttgtggtcctgccctaggtgtcaaacacaattccctgaatgtaactac
aaatacctcctccacatgaaactgcaagatcatacaagcattgtttgggctaatgcattt
gacaacgttggcacagaactcttctctctgtctgcaaaggagctatacatgttacaatat
gacttgacaacagaaaaaacacctcacatcatactcaaaaaagctatgttcaagcactat
acctttacaactttagtgtctactgacacattcaactctgagcgcaggatcaaagtcaca
atcgacaaaatgcaaagactcgatttcaaagctgagtacccctgcctgcttgcagaaatt
gcccaaatgcatgcaatcacatga
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