Cryptomeria japonica (Japanese cedar): 131066549
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Entry
131066549 CDS
T10556
Name
(RefSeq) serine/arginine-rich splicing factor SR45a isoform X1
KO
K12897
transformer-2 protein
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131066549
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cjf01009
]
131066549
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131066549
Protein phosphatases and associated proteins [BR:
cjf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
131066549
Spliceosome [BR:
cjf03041
]
Common components
Common spliceosomal components
SR proteins
131066549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
131066549
NCBI-ProteinID:
XP_057857316
LinkDB
All DBs
Position
5:302892754..302914779
Genome browser
AA seq
218 aa
AA seq
DB search
MADTPRRRYSDSPSPRRRYGRSRSRSRSRSRSRSLSKSRSPARRDSSKDDVVNPGNNLYV
TGLSARVVEKDLEEHFSQEGKVVDCRIVVDPRTRESRGFGFVTMDTLEDAERCVKYLNRS
TLEGRIITVEKAKRKRARTPTPGSYLGVRAAVRPRSYGGRYRERDRDRDSYSSRRSPHYS
PYRGSRERDYDRDGSPIYSGRSYRRDRSRSPVYSPYRR
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atggcggacactcctaggcgaagatattcagattctccttcacctaggcgaagatatggg
cgatctcggtcacgatctcgttcacgatcaagatctcgatccctatcaaaatctcgtagc
cctgcaaggagagattcttcaaaagatgatgtagtcaaccctggaaacaatttatatgtc
actggtctttctgcccgtgttgtggagaaagatcttgaagaacacttttctcaggaaggc
aaggtggttgattgccggattgtggtagatccaagaacccgtgaatcaagaggctttgga
tttgtaactatggatacccttgaggatgcagaacgttgtgtcaaatacttgaatagatct
acacttgaagggcgtatcatcactgttgagaaggcaaagcgaaagagggcaagaacacca
acacctggttcttatcttggcgttagggctgctgttcgcccacgttcttatggggggagg
tatcgggagagagatagagatagagatagctatagttcacgtcgttcaccgcactattca
ccttatcgtggaagtcgagaacgagattatgacagagatggttctcctatttactcaggt
cgcagttaccgcagggataggtcaagatctccagtatactccccatatcggcggtag
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