Cryptomeria japonica (Japanese cedar): 131067516
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Entry
131067516 CDS
T10556
Name
(RefSeq) uncharacterized protein LOC131067516 isoform X1
KO
K06100
symplekin
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131067516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131067516
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131067516
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131067516
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131067516
U7-dependent histone pre-mRNA processing factors
131067516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
131067516
NCBI-ProteinID:
XP_057858530
LinkDB
All DBs
Position
10:complement(460710894..460906034)
Genome browser
AA seq
1374 aa
AA seq
DB search
MAMEREEEMRNEAVRWLNSYKYSVEVGAKMEALRRVKEIVLHRAPRLLHHFLPFLLELQA
DPSSPIRKYLVEMIEEVGLKFLEHLRDIVPVLIAFLKDDTPAVARQAVTTGANLFRNTLE
QVALQGIYSGHLDKQIEDSWAWMVKFKDAVYPIAFQPGADGVRLVAVKFVETMILLFTLD
PSVSRQPPPPQHNNDGKSRGFDISWILESHHPILDAALLGQEANKNLGLLLDQLRLPDVK
VLHSSVAIVLINSLASIAKKRPALFGRVLPVFLELAPSCEPVRGAQVSGVQNSVQNTLKN
AFVGFIKCTNQGATPWRDRLVSALRAMNSGDLAEQALRQVEKMTRNLENSKYEASSEQEP
PSQAYNLISMETGRKRTLVQETGNKATVDDKPGKRVRHNSPVLQHLQSGCDVINESATSN
GNGPGSLMNGPEMTPVQQLVAMFGAIVAQGDRAVESLEILIARIPTDLLAEVVIANMHNL
PSTPPTEDSDDHELPGGSQSTLTGNASQVVPSYNILSQVMALSTSVSQTSMPVMMTSQLP
KSTAPSEVEMAVSQQLVSDTGSTSQRGSGSIETQHMSFPVPVSIASASMGDTSAFPFVSG
MEVNFSEVQVPMIDSEKLIATQRKDQNEALQNIIPGLHGPISIDIKMETADRSSILSSVP
MTSTQNVVLTGSNNKEMQETSLPGQSGINKSGSAIPGTFISEPIRSSAPITAMSGGTYTA
LAVTPPIINLSEEQQTSLSRMAFVRIIEAYRQVSSAGGCELRVALLTRLVDQCSADYDVR
EVLQKHILSDYKNFKGHELTLHVLDQLFGEMVSRQKDTGSSLGVASIYENFLLIVAQTLR
DSLPASDKSLSKLLGEVPLLPDSAFKILENLCCVGRYDKDGKEALSGDRLTQGLSAVWSL
ILLRPPARSICLDIALQTAVHPIEDVRSKAIRLVANKLYPLNSISQNIEEFATKMMLSVA
DNIQGGDSMEIGGLRIVGRESINQQDLSNGWPKVSNSSRNCGESSNGKDQPGSEHSVSNV
SITEAQRCMSLYFALCTKKPALLQKVFSMYKNAPKAVKQAVQRHIPLLIRTIVLPGQSSE
LLRIISNPPAGSESLLMQVLQILTDGTTPSPDLIATVKTLHETKLKDAGILIPILSSLAK
DEVLPIFPQLVSLPPEKFQAALARILQGSAHTGPALTPAEVLIAIHGIDPERDGIPLKKV
TDACSACFEQRDVFTQQVLAKVLNQLVEQTPIPLLFMRTVIQAIGAFPSLVDFIMEILSR
LVSKQIWRFPKLWVGFLKCAYQTKPHSFHVLLQLPAAQLENALHKHSVLRAPLVMHANQP
NIRSTLPRSTLVVLGLVQETQSANLASQNPQSMDASTPVTIANETQASESVAGS
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggagagagaggaggagatgcggaacgaggcagtgcggtggttgaactcgtac
aagtacagcgtggaagttggagcgaagatggaggcgctgagaagggtgaaggagatagta
ctgcacagagcccctcgcttgcttcaccactttttgcccttcctcctcgaacttcaggcc
gacccctccagtcctattcgcaaatatcttgtcgagatgattgaagaagttggcttgaaa
ttcttggaacacttgcgtgatattgttccagtcttgattgcatttttgaaagatgacaca
ccagctgttgcacggcaggccgttactacaggggcaaatttgtttcgaaatacactggaa
caggtggctctgcagggcatctattcaggtcatttagacaaacagattgaagattcatgg
gcatggatggttaaattcaaggatgcagtatatccgattgctttccagcctggagctgat
ggcgtaagattggtggcagtgaagtttgttgaaacaatgatactactctttaccttggat
cccagtgtctcccgacaaccaccacctccccaacacaataatgatgggaaatcgaggggc
tttgatatatcatggatacttgaaagtcatcatcctatcctcgatgctgcactgttagga
caggaagctaataaaaatctgggtcttctattggatcagctgcggctgcctgacgtcaaa
gtgcttcatagttcagttgccatcgttcttataaatagtcttgcatcaattgcaaagaaa
agacctgctctttttgggagagtgttgcctgtttttcttgagctagccccaagttgtgaa
cctgtaagaggagctcaggtttctggtgtgcagaacagtgtacagaatacactgaaaaat
gcttttgtgggatttattaagtgtacaaatcaaggtgcaactccgtggcgtgaccgcttg
gtaagtgccctgagagcgatgaattctggggatttagctgaacaagctctccgccaggtt
gagaaaatgactaggaatttggagaactccaaatacgaagcatcatctgaacaggagccg
ccaagtcaagcttataatcttatatcaatggaaacaggtaggaagaggactttggtgcaa
gaaactggcaataaggcaactgtagatgacaagccaggaaagcgagttcgacataattct
ccagttctacaacatctccaatctggctgtgatgtaatcaatgaaagtgccacttccaat
gggaatggtcctgggagcttgatgaatgggcctgaaatgaccccagttcaacaattggtt
gcaatgtttggtgcaattgttgcacaaggagacagggctgttgaatctctagaaattttg
attgcgagaattccaacagatttgttagctgaggtagtcatagctaacatgcacaattta
ccgtcaactcctccaactgaggacagtgatgatcatgagctgccaggaggttcccagtca
actcttacagggaatgcctctcaggttgtgccatcatataatattttatcacaagtaatg
gcgctttcaacttccgtttctcaaacatcaatgccagtgatgatgacatcacaactacca
aagagcacagcaccatctgaagtagaaatggctgtttctcagcaacttgtctctgacact
ggttctacttctcaaaggggttctgggtcgatagagacgcagcatatgtcttttccagtt
cctgtatctatagcatctgccagcatgggggatacaagtgccttcccatttgtttcagga
atggaggtaaacttctcagaggttcaagtgcccatgattgacagtgaaaaattgattgct
acacaaaggaaagaccaaaatgaagcactgcagaatatcattccaggcctacatggtcct
atttcaatagacataaagatggagactgcagatagaagtagcattttatcatcagtaccc
atgacatcaacacaaaacgttgttttgactggctctaataacaaagaaatgcaagaaact
tctctgccggggcagtcaggaattaataaatctgggtctgccatacctggaacttttatt
tcagagcccataagatcttcagcgccaattacagccatgtctggaggtacatatactgca
cttgcagtgacaccaccaattataaatttgagtgaagagcaacaaacttcattaagcaga
atggcatttgttcgcattatagaggcatacagacaagtttcttcagctggaggctgtgaa
ttgcgagttgcgttgcttacaagactagtagatcagtgtagtgctgattatgatgttcga
gaagtcttgcaaaaacatatattgtcagactacaagaatttcaagggtcatgaattgaca
ttacatgtacttgaccaattatttggagagatggtatctcgacaaaaggatactggctca
tctttgggggttgcttcaatttatgagaattttcttctcattgtggcacaaactttgcgt
gattctcttccagcctccgataaatccttgagtaaattacttggtgaggtcccacttctt
cctgattcagcctttaaaatactggagaacttatgctgtgtaggaagatatgataaggat
ggaaaggaagcccttagtggtgatcgacttactcaaggtctcagtgcagtatggagctta
atcttgctacggccacctgcaaggtctatttgtttggacattgctttacagacggcggtg
catccaattgaagacgtgcgatcgaaagccattcgtctggtggctaataagttatatcca
ctaaactctatttctcaaaatatagaggagtttgcgacaaaaatgatgctttctgtggct
gataacattcaaggcggggatagtatggagattgggggattaagaattgttgggagagag
agtatcaatcaacaggatctatctaatgggtggccaaaagtaagcaattccagtaggaat
tgtggagaaagttctaatgggaaagaccaaccaggttctgaacatagtgtttctaatgtg
tccattacagaagcacagcgctgcatgtcactatactttgctctctgcacaaagaagcct
gctcttcttcagaaagttttcagtatgtataaaaatgcgccaaaggctgtaaagcaggca
gttcaacgtcacattcctcttctaatacgcaccatagtattaccaggacaatcatcagaa
ttacttcgaattatatctaatcctcctgcagggagtgagagccttcttatgcaggtattg
cagatattaacagatgggaccactccttcacctgatttgattgcaacagtgaagacatta
catgagaccaagttgaaggatgcaggaattctgattccaatattgtcatcattggcaaaa
gatgaggtcttacctatttttcctcagcttgttagccttccacctgaaaagtttcaggct
gcacttgcacggattctacagggttctgcccatacaggacctgctttaacaccagcagag
gttttgattgcaatacatgggatagatccagaaagagatggtattcctttaaaaaaggtg
accgatgcatgtagtgcttgctttgagcagcgtgatgtattcacccaacaagttttagca
aaagtgttgaaccaattggtggagcagacaccgattcctctgttatttatgcgcacagtt
attcaagcaattggtgcttttccttcactggtggattttataatggaaatactctcacgc
ttggtaagcaagcagatctggagatttccaaagttatgggttggattcctaaagtgtgca
taccaaacgaagccacattcatttcatgtcttattgcagttacctgcagcacaacttgaa
aatgcattgcacaagcattctgtattgagggcacctctggttatgcatgccaaccaacca
aacatccggtctacattgccaaggtcaactctagtggtcttgggtcttgttcaggaaacc
caatctgcaaacttggcttctcaaaatccccagtcaatggatgcatcaactcctgtaaca
atagcaaatgagacgcaagcatcagaatctgtggctggcagttga
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