Cryptomeria japonica (Japanese cedar): 131067651
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Entry
131067651 CDS
T10556
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013
Nucleocytoplasmic transport
cjf03015
mRNA surveillance pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131067651
09122 Translation
03013 Nucleocytoplasmic transport
131067651
03015 mRNA surveillance pathway
131067651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131067651
03041 Spliceosome [BR:
cjf03041
]
131067651
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131067651
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131067651
Spliceosome [BR:
cjf03041
]
Complex C
Other components
EJC/TREX
131067651
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131067651
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
131067651
NCBI-ProteinID:
XP_059069799
LinkDB
All DBs
Position
11:204257893..204333557
Genome browser
AA seq
438 aa
AA seq
DB search
MVDMKENDTYQEELLDYEEDEETAPDLVASKAAAETVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDVKVAVFYGGVHVRIHKELLKNECPHIVVGTPGRVLA
LARDRELNLRSVRHFILDECDKMLESLDMRRDIQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLMDALDFNQVVIFVRSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAGDSDVLNQVQERFEVDIKELPEQI
DTSTYSKYNLIFLCLELS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggttgacatgaaggagaacgacacttaccaggaggagcttcttgattatgaagaggat
gaagaaaccgcccccgatctcgtcgcgtctaaggctgccgctgagaccgttaaaaaaggt
tatgttggtatccacagttcaggatttagagattttttgttaaaaccagaactacttcga
gctattgttgattctggatttgagcatccttcagaagtgcaacatgagtgcattcctcag
gccatccttggtatggacgttatttgtcaagcaaagtctggaatggggaagactgctgtc
tttgtgctttcaactcttcagcaaattgaacctgttgcagggcaagtcgctgcccttgtg
ctgtgccatactcgagagttggcatatcagatatgccatgaatttgagaggtttagcacc
tacttgcccgacgtaaaggttgcagtattctatggaggtgtgcatgtcagaattcacaag
gaattgctaaaaaatgaatgccctcatattgttgtcggaactcctggacgagttttggca
ttggcaagggatagagaacttaatcttagaagtgttagacattttattcttgacgagtgt
gataaaatgctagaatctcttgacatgcggagagacatacaggagattttcaagatgact
ccccatgacaaacaagtaatgatgttctctgcaactctgagcaaagaaattcggccagtc
tgcaagagatttatgcaagatccaatggagatatatgtggatgacgaggcaaaattgaca
ttgcatggattagtgcagcactacatcaagcttagcgagtctgagaagaatcggaaactg
aatgatctgatggatgcattggatttcaatcaggttgttatttttgtcaggagtgtaagt
agagcagctgagcttaacaagttgcttgtggagtgcaattttccttctatctgcattcat
tctggaatgtcacaagaggaaagattgactcgctataagaacttcaaggagggcctcaaa
agaattttagtagcaacagatttagttggccgaggaatagacattgaacgtgtaaatatt
gtaattaactatgacatgccagattcggcagatacttatttgcacagggttgggagggca
ggaaggtttggtactaagggtcttgctattacatttgttgcttcagcaggtgactcagat
gtgcttaatcaggttcaggagcgatttgaagttgatataaaggagcttcctgaacaaatt
gatacttcaacatatagtaagtacaatttgatctttctttgccttgaactctcttga
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