Cryptomeria japonica (Japanese cedar): 131067875
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Entry
131067875 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131067875
03420 Nucleotide excision repair
131067875
03430 Mismatch repair
131067875
03440 Homologous recombination
131067875
03460 Fanconi anemia pathway
131067875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131067875
03032 DNA replication proteins [BR:
cjf03032
]
131067875
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131067875
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131067875
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131067875
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131067875
MMR (mismatch excision repair)
131067875
DSBR (double strand breaks repair)
HR (homologous recombination)
131067875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep_fac-A_C
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
131067875
NCBI-ProteinID:
XP_059078107
LinkDB
All DBs
Position
6:514546110..514555018
Genome browser
AA seq
391 aa
AA seq
DB search
MCTNADCFIGLVSEVVGVNGFTMPGLLLWLFYLSVCGCDYFQSASSLFTLTGSHYIISKG
SVKEANARYNNLNSHLEITLSDTSILKRCTNEEQPDQQSPPFTPISELFHLTNNTMVDII
GLVLYVGDIIPIHRKDGSQTQKCVVKINDLSSSTIDINLWGPMVEQKGLEVKNMLTNDSV
VILALRNARVGYFNGKLINITAATTLHINPSFPEAELLKLKGKDPLLVVPFIAETIHIDG
KYTRMTISSICERMSVKLETIQTTLLVILHFVNVNDQNFYYTACPLIVNGRPRKKKCTLW
ATAFDEGGIHLLHKTAKQLYALQNDATTTETPSSVIKRLLSRYYSFTVLLSTKTYNSESK
MKMTVNKVAPVDFKVECHALLAETSYLSTES
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaccaatgcggactgttttattgggcttgtttctgaggttgtcggcgttaatggt
tttacaatgccaggattgttactttggttattttatttaagtgtttgtggatgtgattac
tttcagtctgcatcgtctctgtttactttgacaggttcacattatattatttcaaaagga
tctgttaaggaggcaaatgcaaggtacaacaacctaaacagccatttagaaatcaccttg
tctgatacatccatactaaaacgttgcaccaatgaagaacaaccagatcaacaaagtcct
cctttcacgcccattagtgaattgtttcatctaacaaataacacgatggttgacataatt
ggtcttgttctatatgttggagatatcattcctatacataggaaagatggcagtcaaaca
caaaaatgtgtggtgaaaattaatgatctatctagttcaacaattgacatcaacttatgg
ggtccaatggtagaacaaaagggcctagaagtgaaaaatatgttgaccaatgatagtgtg
gttatccttgctttgcgtaatgctcgtgttggctatttcaatgggaagcttataaacata
acagctgcaacaacattacatattaacccaagttttccagaagcagagcttctaaaatta
aaaggaaaggaccctttgcttgttgtaccctttattgcagaaactatccacatagatgga
aaatatactagaatgacaatttcttcaatctgtgagcggatgagcgtcaaactagaaaca
attcagacaacattgctagttattctgcactttgtgaacgtcaatgatcaaaatttctat
tacacagcttgcccactaatagtcaatggaaggcctcgcaagaaaaaatgtactctatgg
gccactgcatttgatgagggtggcattcacttgctacacaaaactgcaaaacagctctat
gcactacaaaatgatgcaacaacaacagagacaccttcctcagtgatcaagagactacta
tcacgttactattcattcacagtgttgctttctactaagacatataattcagaatcaaag
atgaaaatgacagtcaataaagttgctcctgttgacttcaaagttgaatgccatgcacta
cttgcagaaactagctacctaagtacagagagttag
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